Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03779 ATGGAATCAACTCATGTTATATCCATTACAAATGAAGAAGATAGCAACAACAATAATATTGCTCAAATGAAGAAAGAAACAAATACTCATACTGGTAAAAATAAAATCAATTGTTCTTTTGTTCCAACCTATCTAAAGGACAATAATAAGAGGCAGATAAAAAGTGACCATGACATTAAGAAGATGATTCATAGCATCAAAGTAGGACTCTCACTTGTTTTGGTTTCACTTCTTTACATTATAAATCCTCTCTTTGATCAAGTTGGTGAAAATGCAATGTGGGCTATTATGACTGTTGTTGTCATCTTTGAATTCAATGCAGGAGCTACACTTGGAAAAGGCTTCAACCGTGGAATAGGGACTATTGTTGGAGGAGGATTGGGATGCTTAGCAGCAATTTTTGCACAAAACATTGGGGGAGTTGGCAACTCAATTTTCATTAGTACTTCAGTATATATCTTTGGATCAGTTGCTACATATTTTCGACAAGTTCCAAAAATAAAGACTAGATATGATTATGGAGTTGTGGTATTTATGCTAACATTCAATCTAGTAGTGGTATCTGGGGCACGTCCAGGAATTAAAGTTTGGGAAATAGCAAGAGAACGTTTATTGACAATCTTAATGGGTTTTATTGTTGCAATTTGTGTCAATTTATTTGTTTATCCTCTGTGGGCCAGTGATGAACTTCATGATTCCATTGTCTCAAGATTCCACCATCTTGCAAATACAATTCAAGGTTGCTTAGAGGAATGTTCAAAATCAATTAAGGAAAAGGAAAATCAAACCGATGCTACCAACTTCACAATTTGCAAGTCAGTGTTGAACTCCAAGTCAAAGGATGAATCATTGGCAAATTTTGCAAAATGGGAACCTTGGCATGGAAAATTTGGATTTTCCTACCCATGGGAAAAATACTTAAAGATTGGAGAGGTTCTTCGAGAACTAGCTACACTTATTCTTGCATTGGAACGTTGCCTCCAAGCCTCAAAAAATCCCACTGCATCTTTGAAGAGATCAAAAGCTCAATTAGAACAGTGTGAAGCAATTGGGTCAAGGGTTGTTTGGACTCTACGAGAAGTTGGAGATAGCATGAAAAAAATGAGAAAATGTGAAGAAAGGGACAACATTATAGATAAGTTGAAAACAACTAGAGAAGAGTTGAGTTTGGTGATTTCAACCTCAAATATTGCAGAATTTGAGAATGGTGAAATGCTAGCAATTGCAAGCTTAGTGTTTTTGCTTATGGAAGTGGTGGAGAAGGTTGGTGAATTGGTTATAGAGGCCGGGGAACTTCAAGATAAAGCCGGTTTTCGCACCCGCGTAACTCCAGTGTCTTCTTAG 1344 0.3668 MESTHVISITNEEDSNNNNIAQMKKETNTHTGKNKINCSFVPTYLKDNNKRQIKSDHDIKKMIHSIKVGLSLVLVSLLYIINPLFDQVGENAMWAIMTVVVIFEFNAGATLGKGFNRGIGTIVGGGLGCLAAIFAQNIGGVGNSIFISTSVYIFGSVATYFRQVPKIKTRYDYGVVVFMLTFNLVVVSGARPGIKVWEIARERLLTILMGFIVAICVNLFVYPLWASDELHDSIVSRFHHLANTIQGCLEECSKSIKEKENQTDATNFTICKSVLNSKSKDESLANFAKWEPWHGKFGFSYPWEKYLKIGEVLRELATLILALERCLQASKNPTASLKRSKAQLEQCEAIGSRVVWTLREVGDSMKKMRKCEERDNIIDKLKTTREELSLVISTSNIAEFENGEMLAIASLVFLLMEVVEKVGELVIEAGELQDKAGFRTRVTPVSS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03779 447 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 54 440 - -
Trre13g03779 447 Pfam Aluminium activated malate transporter 57 394 IPR020966 GO:0015743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03779 Trre-Chr13 45915530 45919501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03779 58 428 Miscellaneous Gene Families AT1G08440 38.196 7.37e-84 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03779 K25841 - gmx:100779890 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03779 13 45915530 45919501 Trre13g03779 13 45915530 45919501 ECH