Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03774 ATGAAGCTCGTTAGGTTTCTCATGAAGTTGAACAATGAAACTGTCTCAATCGAGTTAAAGAATGGTACTATTGTTCACGGCACCATTACAGGTGTTGATATCAGCATGAATACACATTTGAAAACAGTTAAGCTAACTCTAAAGGGGAAAAATCCAGTTACTTTGGATCATCTCAGTGTAAGAGGCAACAACATTCGTTATTATATCCTTCCCGACAGCTTGAATCTTGAAACTTTACTGGTTGAAGAGGCTCCTAGAGTCAAGCCTAAAAAGCCAACTGCTGGGAAGCCTTTGGGGAGAGGACGTGGGCGAGGACGTGGACGCGGTCGTGGTCGCGGCCGTTAA 345 0.4406 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGKPLGRGRGRGRGRGRGRGR 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03774 114 Gene3D - 50 82 - -
Trre13g03774 114 Gene3D - 1 49 - -
Trre13g03774 114 MobiDBLite consensus disorder prediction 93 114 - -
Trre13g03774 114 MobiDBLite consensus disorder prediction 83 114 - -
Trre13g03774 114 Pfam LSM domain 5 69 IPR001163 -
Trre13g03774 114 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM 4 113 IPR027141 GO:0006396
Trre13g03774 114 SMART Sm3 5 70 IPR001163 -
Trre13g03774 114 ProSiteProfiles Sm domain profile. 2 74 IPR047575 GO:0003723
Trre13g03774 114 SUPERFAMILY Sm-like ribonucleoproteins 4 113 IPR010920 -
Trre13g03774 114 FunFam Small nuclear ribonucleoprotein Sm D1 1 82 - -
Trre13g03774 114 CDD Sm_D1 2 93 IPR034102 GO:0000387
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03774 Trre-Chr13 45844754 45847151 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03774 K11087 - jre:109010907 195.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03774 13 45844754 45847151 Trre13g03774 13 45844754 45847151 ECH