Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03765 ATGTTAGCGCTAAACCTCACCGGAAACAACACCGTTTTCCCGCCGGATTCGTTCGTTTACGACGCCGACGACATTCCGTTTGGTACAGTATGGTGGTTTATTTACGCCGGAATTTCATGTCTACTTGTTATCTTTGCTGGTATCATGTCTGGTCTTACTCTTGGCTTAATGTCTTTGGATTCTGTTGGTCTTGAAATTCTTCAAAGAAGTGGTTCTTTCACTGAGAAAAAACAAGCTGCTGCAATTTACCCTGTTCTTCAAAAACAACACCAGCTGCATGTTACTTTGCTTCTTTGTAATGCTCTTGCTATGGAGGCCCTTCCACTTTACCTTGATAAACTTTTTCATCCTGTTGTAGCAGTGTTACTATCAGTAACTTTTGTTCTGGCTTTTGGCGAGGTCATCCCACAAGCTATATGCACAAGATATCGCCTCTATGTTGGAGCAACATTTATCGGGCTTGTACGTGTCCTCATGTTCATCTGTTATCCAATTGCATACCCTATTGGAAAGGTTATGGATATTTTGCTTGGACACGATGATGTACTCTTTAGGCGAGCACAATTGAAAGCCCTTGTTTCAATCCATAGTGAAGAGGCTGGTAAAGGAGGTGAACTCACACATGACGAGGCAACAATTATCAGTGGAGCACTAGATCTCACTCTGAAGACCGCAGAGGAGGCTATGACACCAATTGAGTCAACATTTTCCTTGGATGTTGCTTCCAAATTGGACTGGGAAGCAATTGGGAAAATTCTTGAACGAGGTCATAGTCGTATTCCCGTATACAGTGGAAGCCCGAAAAATATAATTGGCATTTTACTAGTAAAAAATCTTCTTACTTTAAGAGCTGAGACAGAGAGTCTAGTTAGTTCCGTTTCCATCCGGAAAATTCCTAGGGTTCCAGCAGATATGCCTTTATACGATATCCTCAACGAGTTTAAAAAGGGAAACAGTCATATGGCAGCTGTAGTCAAGGTTATAAGAGAGAAAAACAACCCTCAGGAAGCTGGTGACTTCGACAAATCCAACGATGAAGTAGGCATCAATCATAGTTCTCAATTGACTGTGCCTTTGCTAGCCGGGTCTTGTGAGAAATCAGACAATGTCGTCGACATTGACAAGCTTTCTAGGCATCGTAACCATGGAGGATATAACGATGAGAAGAATGCCAACCAACAATGCCAAGAAAATGACACTGAACCAAATAGTTTCCACCATTTTCCTTATGATAAAGATGGGGAAGTTATTGGTATCATAACCTTGGAGGACGTTTTTGAAGAACTCCTGCAGGAAGAAATTGTGGATGAGACAGATGTGTATATAGATGTACAGAGGAGAATACGTGTTGCTGCTGTTGCAGCTGCTTCATCTGTTGCACGAGTTCCATTAGGCCAAAGGTCGACAGGTCACAAGCTTTCAGGGAATCAAGCAAGCAGATGA 1443 0.422 MLALNLTGNNTVFPPDSFVYDADDIPFGTVWWFIYAGISCLLVIFAGIMSGLTLGLMSLDSVGLEILQRSGSFTEKKQAAAIYPVLQKQHQLHVTLLLCNALAMEALPLYLDKLFHPVVAVLLSVTFVLAFGEVIPQAICTRYRLYVGATFIGLVRVLMFICYPIAYPIGKVMDILLGHDDVLFRRAQLKALVSIHSEEAGKGGELTHDEATIISGALDLTLKTAEEAMTPIESTFSLDVASKLDWEAIGKILERGHSRIPVYSGSPKNIIGILLVKNLLTLRAETESLVSSVSIRKIPRVPADMPLYDILNEFKKGNSHMAAVVKVIREKNNPQEAGDFDKSNDEVGINHSSQLTVPLLAGSCEKSDNVVDIDKLSRHRNHGGYNDEKNANQQCQENDTEPNSFHHFPYDKDGEVIGIITLEDVFEELLQEEIVDETDVYIDVQRRIRVAAVAAASSVARVPLGQRSTGHKLSGNQASR 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03765 480 CDD CBS_pair_CorC_HlyC_assoc 224 325 IPR044751 -
Trre13g03765 480 FunFam DUF21 domain-containing protein 208 343 - -
Trre13g03765 480 Pfam Cyclin M transmembrane N-terminal domain 38 209 IPR002550 -
Trre13g03765 480 Gene3D - 210 349 IPR046342 -
Trre13g03765 480 MobiDBLite consensus disorder prediction 387 403 - -
Trre13g03765 480 MobiDBLite consensus disorder prediction 378 403 - -
Trre13g03765 480 PANTHER METAL TRANSPORTER CNNM 17 454 IPR045095 GO:0010960
Trre13g03765 480 SUPERFAMILY CBS-domain pair 216 431 IPR046342 -
Trre13g03765 480 Gene3D - 376 437 IPR046342 -
Trre13g03765 480 ProSiteProfiles CNNM transmembrane domain profile. 28 210 IPR002550 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03765 Trre-Chr13 45762092 45766376 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03765 K16302 - gmx:100777230 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03765 13 45762092 45766376 Trre13g03765 13 45762092 45766376 ECH