Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03760 ATGGCAAATCTTTTGCCATCAATTTCATTCTCAGTGATTCCACTTAATCAGCACAAATACAGAACCAAATGCTCTTCTTTTCACATCCACAGGAAGCATCAGCACCAAATTGTTAGCACAAATTTGCAAGATCTCGTTATACCCTTTTCTCAGAATTTCACTTCAAAATTATGTGCCACTTCAAAATTGTCTATAGAAGAAACTGAGAAGAAAGTGGTTCCTTTTACACAATCAGAAGACATCAAAACATCATTGTCTTATTTGTTTAGGACAGAAATAGGTGAAGGTTTGGTTAAAGTTTATGTTAAAAAGAAAAAAGTTAGTTATTTTGTTTATATTGAGGTTTCTTCTTTGGAGTTATTAAGGAATGTTGAAGGGGAAACATTGGTGTTATGTTGGGGTGTGTATAGTGATGATTCATCAAGTGTGGATGATGTAAAAGGGATGAATTTGAGTCCATTTGTGAAGAATTCTCTTGGAAAGTTTTCAGTTGAATTGGAATTTGATGTTGAAAAAGTTCCTTTGTACTTGTCTTTTTTGTTGAGATTTTCTGGGTTGGAAATTAGAACTCATTTGAAAAGGAATTTTTGCGTGCCTGTTGGTTTTTTTCGGGGTCGTCCATCTCCATTGGGGATCTCATTTTCCCCTGATGGGCCTATCAATTTCGCCGTTTTTTCAAGGCATGCAGAGAGTGTGGTATTGTGTTTATATCATGATGATGATGGTGTGGAGAAGCCTTCTTTGGAGATTGATCTTGATCCTTATGTGAATAGATCAGGTGATATTTGGCATATATCTTTTGAGAGTGCAAGGAATTTTGTGAGATACGGTTATCGATTCAGAGGAGTTGATAGGGATAATAGTTATGCCGAGTGTGTTGTTTTGGATCCTTATGCTAGACTTGTTGGGAATTCATTTCAGAATGGTGTTGGATCGACAAAGAACCTTGGATTATTGAAAAAGGAACCTGCTTTTGATTGGGGTGATGATTATTATCCGGATTTGGAAATGGAGAAACTAGTGGTGTATAGGTTGAATGTGAAGCGCTTTACCGAGCATGAATCGAGTCAACTTTCCAGTGACTTAGCTGGGACATTTTCTGGTTTGGCTAAAAAGTTGCAGCATTTTAAAGATCTTGGTGTGAATGCTGTTCTGTTGGAGCCGGTTTTCACATTTGATGAGAAAAAGGGACCTTATTTTCCTTGTCATTTTTTCTCCCCAATGAACCTTTATGGACCATCCGGCGAATCTGTATCTACTATAAACTCTATGAAAGAGATGGTGAAAACTATGCATGCCAATGGGATAGAAGTTATAATGGAAGTTGTTTTCTCCAATACTGCTGAGACCGGTGCTCTACAAGGTATTGACAACTTATCTTACTATTATGCAAATGGGGTCGGTGGTTTGAAGGTACACAGTGCTTTGAATTGTAACTATCCTATAGTGCAAAATTTGATTTTGGATAGCCTTAGGCATTGGGTAACTAAGTTTCACATTGATGGTTTCTCTTTTGTAAATGCTTCACATTTGTTGAGGGGGTTTCATGGAGAACACTTGTCTCGACCTCCCTTGGTCGAAGCAATTGCTTTCGATCCGGTACTGTGGAAAACTAAAATCATTGCAGATTGTTGGGATCCCAATGACATGGAACCAAAGGAAACTCGGTTTCCTCATTGGATGAGATGGGCTGAAATAAATACAAATTTCCGCAACGATGTGAGGAACTTTCTAAGAGGTGAAAGTCTTCTTAGCAATCTTGCAACAAGACTTTGTGGGAGCGGAGACGTGTATTCCGATGGAAGAGGACCAGCATTCTCTTTTAATTACGTTGCTGGGAATTTTGGACTTTCTCTTGTGGACTTGGTCAGCTTCAGCAGTGGTGATCTAAAGACGGAGTTGAGTTGGAACTGCGGAGAAGAAGGACCTACTAATAAAACTGTTGTCCTCGAAAGACGACTCAAACAAATCCGTAATTTCCTATTCATCTTGTTTGTGTCATTAGGAGTTCCTATTTTGAACATGGGAGATGAGTGTGGTCACTCTTCTGGTGGTTCTCCTGCATATGGCGACACAAAGCCCTTCAATTGGACTGCTTTGAAAACAGGTTTCGGTAAACAAACCACACAATTCATTTCCTTTTTGACTTCATTGAGAACGAGGCGGAGTGATCTTCTTCAAAGTAAGAGCTTCTTAAAAGAAGAAAACATCAAATGGCGCGGAACTGACATTTCTCCGCCAAGATGGGAAGACCCATCCTGCAAGTTCCTGGCCATGAATTTGAAGGCTGAAAGAAAGGAGCTACAAGAGAGCTCTCCATCTTCTGATATATCAGGGGATTTATTTATTGCTTTCAATGCATATGATCACCCAGAGACTGTAGTTTTACCCTTGCCTCCAGAAGGGATGTCATGGTACCGCTTAGTCGATACTGCTCTACCATTTCCCGGGTTTTTCTTGACCAATGGTGATATTGTCCCTGAGCAAATATCAGGTTTGTATACTTATGAAATGAAGTCTTACAGCTGCACTCTGTTTGAGGCAAACAATAGTAATATTTAG 2562 0.3931 MANLLPSISFSVIPLNQHKYRTKCSSFHIHRKHQHQIVSTNLQDLVIPFSQNFTSKLCATSKLSIEETEKKVVPFTQSEDIKTSLSYLFRTEIGEGLVKVYVKKKKVSYFVYIEVSSLELLRNVEGETLVLCWGVYSDDSSSVDDVKGMNLSPFVKNSLGKFSVELEFDVEKVPLYLSFLLRFSGLEIRTHLKRNFCVPVGFFRGRPSPLGISFSPDGPINFAVFSRHAESVVLCLYHDDDGVEKPSLEIDLDPYVNRSGDIWHISFESARNFVRYGYRFRGVDRDNSYAECVVLDPYARLVGNSFQNGVGSTKNLGLLKKEPAFDWGDDYYPDLEMEKLVVYRLNVKRFTEHESSQLSSDLAGTFSGLAKKLQHFKDLGVNAVLLEPVFTFDEKKGPYFPCHFFSPMNLYGPSGESVSTINSMKEMVKTMHANGIEVIMEVVFSNTAETGALQGIDNLSYYYANGVGGLKVHSALNCNYPIVQNLILDSLRHWVTKFHIDGFSFVNASHLLRGFHGEHLSRPPLVEAIAFDPVLWKTKIIADCWDPNDMEPKETRFPHWMRWAEINTNFRNDVRNFLRGESLLSNLATRLCGSGDVYSDGRGPAFSFNYVAGNFGLSLVDLVSFSSGDLKTELSWNCGEEGPTNKTVVLERRLKQIRNFLFILFVSLGVPILNMGDECGHSSGGSPAYGDTKPFNWTALKTGFGKQTTQFISFLTSLRTRRSDLLQSKSFLKEENIKWRGTDISPPRWEDPSCKFLAMNLKAERKELQESSPSSDISGDLFIAFNAYDHPETVVLPLPPEGMSWYRLVDTALPFPGFFLTNGDIVPEQISGLYTYEMKSYSCTLFEANNSNI 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03760 853 SMART aamy 344 719 IPR006047 GO:0005975
Trre13g03760 853 Pfam Alpha amylase, catalytic domain 364 450 IPR006047 GO:0005975
Trre13g03760 853 SUPERFAMILY Glycosyl hydrolase domain 734 848 - -
Trre13g03760 853 CDD AmyAc_plant_IsoA 338 727 IPR044096 GO:0019156|GO:0019252
Trre13g03760 853 PANTHER GLYCOGEN DEBRANCHING ENZYME 172 849 - -
Trre13g03760 853 Gene3D - 735 853 IPR013780 -
Trre13g03760 853 CDD E_set_GDE_Isoamylase_N 208 344 IPR044505 -
Trre13g03760 853 Gene3D Immunoglobulins 198 318 IPR013783 -
Trre13g03760 853 Gene3D Glycosidases 321 734 - -
Trre13g03760 853 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 209 299 IPR004193 GO:0004553|GO:0005975
Trre13g03760 853 SUPERFAMILY (Trans)glycosidases 323 724 IPR017853 -
Trre13g03760 853 SUPERFAMILY E set domains 205 333 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03760 Trre-Chr13 45692459 45695020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03760 1 852 Glycoside Hydrolase AT1G03310 54.719 0.0 914
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03760 K01214 - gmx:100777953 1235.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03760 13 45692459 45695020 Trre13g03760 13 45692459 45695020 ECH