Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03750 ATGTTGTTCTTCTCATATTTCAAAGATTTAGTCGGAAAAGAAGTCACGGTAGAACTCAAGAACGATTTAGCCATAAGAGGAACATTGCATTCTGTTGATCAATACCTCAATATCAAACTCGAAAATACTCGTGTTGTTGATCAAGACAAATACCCTCACATGCTTTCTGTAAGGAACTGCTTCATCAGAGGATCTGTGGTGAGATATGTGCAATTGCCTCCAGAAGGTGTGGACATTGATCTATTGCACGATGCCACGAGAAGGGAAGCCCGGGGTGGTTGA 282 0.4184 MLFFSYFKDLVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPEGVDIDLLHDATRREARGG 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03750 93 Gene3D - 1 92 - -
Trre13g03750 93 ProSiteProfiles Sm domain profile. 2 76 IPR047575 GO:0003723
Trre13g03750 93 PANTHER SNRNP CORE PROTEIN FAMILY MEMBER 1 91 IPR016654 GO:0006397
Trre13g03750 93 PIRSF Lsm2 1 93 IPR016654 GO:0006397
Trre13g03750 93 FunFam U6 snRNA-associated Sm-like protein LSm2 1 93 - -
Trre13g03750 93 SMART Sm3 5 72 IPR001163 -
Trre13g03750 93 Pfam LSM domain 7 71 IPR001163 -
Trre13g03750 93 SUPERFAMILY Sm-like ribonucleoproteins 3 92 IPR010920 -
Trre13g03750 93 CDD LSm2 2 90 IPR016654 GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03750 Trre-Chr13 45593014 45597330 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03750 K12621 - pop:18098278 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03750 13 45593014 45597330 Trre13g03750 13 45593014 45597330 ECH