Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03709 ATGGCTTCTTCAGATGCAGCAACAGCAACAACCAAGAAAGGAGGAAGAGGAAAACCAAAAACCAAATCCGTTTCAAGATCAAGCAAAGCCGGTCTTCAATTCCCCGTTGGTCGCATTGCTCGTTTCCTCAAAGCTGGTCGCTATTCTCAGCGTGTTGGATCTGGTTCACCAGTTTATCTCTCTGCTGTTCTTGAATATCTTGCTGCGGAGGTTTTGGAACTTGCTGGAAACGCTGCGAGAGATAACAAGAAGACGAGGATTGTGCCGAGACATATTCAACTTGCGGTTAGGAATGATGAAGAATTGAGCAAGTTGATGGGTTCTGTGACTATTGCTAATGGTGGTGTTTTGCCTAACATTCATCAGAATTTGTTGCCTAAGAAAGTCGCCGGAAAAGGGAAAGGCGAGATTGGATCTGTTAGTCAGGAGTTTTAG 435 0.4483 MASSDAATATTKKGGRGKPKTKSVSRSSKAGLQFPVGRIARFLKAGRYSQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLMGSVTIANGGVLPNIHQNLLPKKVAGKGKGEIGSVSQEF 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03709 144 SMART h2a4 11 131 IPR002119 GO:0000786|GO:0003677|GO:0030527
Trre13g03709 144 Pfam C-terminus of histone H2A 100 134 IPR032454 -
Trre13g03709 144 CDD H2A 13 128 IPR002119 GO:0000786|GO:0003677|GO:0030527
Trre13g03709 144 ProSitePatterns Histone H2A signature. 30 36 IPR032458 -
Trre13g03709 144 SUPERFAMILY Histone-fold 14 131 IPR009072 GO:0046982
Trre13g03709 144 MobiDBLite consensus disorder prediction 1 29 - -
Trre13g03709 144 PRINTS Histone H2A signature 51 66 IPR002119 GO:0000786|GO:0003677|GO:0030527
Trre13g03709 144 PRINTS Histone H2A signature 80 94 IPR002119 GO:0000786|GO:0003677|GO:0030527
Trre13g03709 144 PRINTS Histone H2A signature 22 44 IPR002119 GO:0000786|GO:0003677|GO:0030527
Trre13g03709 144 PRINTS Histone H2A signature 66 79 IPR002119 GO:0000786|GO:0003677|GO:0030527
Trre13g03709 144 PRINTS Histone H2A signature 108 126 IPR002119 GO:0000786|GO:0003677|GO:0030527
Trre13g03709 144 PANTHER HISTONE H2A 16 128 IPR002119 GO:0000786|GO:0003677|GO:0030527
Trre13g03709 144 Pfam Core histone H2A/H2B/H3/H4 17 97 IPR007125 GO:0003677
Trre13g03709 144 FunFam Histone H2A 8 136 - -
Trre13g03709 144 Gene3D Histone, subunit A 9 135 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03709 Trre-Chr13 44810509 44811048 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03709 K11251 - gmx:100787899 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03709 13 44810509 44811048 Trre13g03709 13 44810509 44811048 ECH