Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03682 ATGGACGACGAAGAAGAACAACAAAAGCTTCCAGATCTAGTAAAAGCACTAATCCACCATTTACTCTCTCAAAATCTTCCCCCAAATTCCCAACCCTTAAACCCTAATTCCTCCCAATTTCAAAACTCTCTCCGTTACGCTCACCGCATTCTCACCAGCCACCTAACTCCCTCCATAACACCCGACGCCGCCGCAATCGCCGAATCCATCAAACGCCGTCTCGCCACCGAAGGTAGATCTTCCGAAGCTCTCTCATTCGCTGACCTATACACCAAATTCGCTTCAAAAGCCACTGATGTTGATAACAAGTGGGCCCTACTTCATCTCTTCAATATCATATCGCAAGATCGAAAAACTGCTGTTAATTCTCAATCTCACCTTGATGCTTCGGTGCTTCTCCCGAATTTAACACTCTCCGATAATAACATTCGTCTCCGAATTGAAAATAAGGGATGGGATGATGGTGTTGTGGTTCTTGCTAGAGATCCTAGGAATCGTCGCGAAGTTGCGTTTCGTGAGTATGTGAAATTGGTTAAGGAAGAAAATGATGTGACTGAAGAGGCTATGGTGACTGATGTGCTTTATGCTTGTCAAGGTGTTGATGGTAAGTATGTGAAATTTGATAATGAGAATAATGATTATGTGTTTTTGGATTCAATTAGGGTTTCTAGGGCTACTACTAGTATGGTTCATAAGCTTTGTGAATTAGGGGTTTTGTTTAAGAAGGTTATTGGGTATATAGAGCAGAGTTTAGGTCGTTCTCCGGCGGAAGATGTGGGAACTGTAGGGCAGGCTTTTTGTTCTGCTTTGCAGGATGAGTTGAGTGATTATTATAAGTTGTTGGCTGTGCTTGAGGCTCAGTCTTCGAATCCGATTCCTTTGTTGTCGGAAACTGTGAGTTCGGAAAACTATCTTTCGTTGAGGAGATTGGCTAATTGGCTTGCTGAGCCATTGGTGAAGATGAGATTGATGGCTGATTTGGTTGAGAAGTGTAGGGTTTTAAGAGGTGGGGCGATGGCTGGTGCGATTCATTTGCACGCTAGACATGGGGATCCGATGGTTCATGAGTTTATGAAGAGATTGCTGCAGCGTGTGTGTTCTCCGCTTTTTGAAATTGTGAGGAGGTGGGTTTTGGAAGGGGAGTTAGAAGATATATTTTCTGAGTTTTTCATTGTTGGGCAGCCTGTGAAAGCTGAATCCCTTTGGAGAGAGGGATATAGGCTCCATGATGCCATGCTTCCTTCTTTTATTTCAGCTTCTCTTGCTCAGAGGATTTTGAGGACTGGAAAGTCCATAAATTTTCTCCGTGTTTGCTGTGAGGACCGCGGTTGGGCTCATGCTGCAACTGAAGTTGCCACTGATACAGGGGCGACAGCACGACGAGGTGGTTTTGGTTATGGTGAAACAGATACCCTTGAGTCATTGGTTGATGAAGCTTCAAAAAGAATTGATAAACATCTATTGGATGTAATTTATGAGAGGTATAAATTCAAAGAGCATTGTCTTGCGATTAAGCGGTATTTATTGCTTGGCCAAGGTGATTTTGTGCAATATCTAATGGATATTGTTGGGCCTGAGCTTTCTGTGCCCGCTAACACTATAAGCTCTTTCAAACTTGCGGGATTGCTGGAGACTGCAATTCGGGCGTCAAATGCTCAGTATGATGACCCTGACATTTTGGATAGGCTCAGGGTCAAAATGATGCCACATGAAAGTGGTGATAGGGGCTGGGATGTATTCTCACTAGAATATGATGCAAGGGTTCCACTAGATACTGTATTCACAGAGTCTGTGATGGCGAGGTATTTAAGAATTTTTAATTTTCTCTGGAAGCTTAAAAGAGTAGAACATGCACTTATTGGTGCCTGGAAGACCATGAAACCAAACTGCATAACTTCTAATTCCTTTAATAGATTGCAAGGTGCAGTAAAGATGCAGTTAGTTTCAGCGTTGAGGCGCTGCCAAGTTCTTTGGGTTGAAATTAATCACTTCATTTCAAACTTGCAATACTATATAATGTTCGAAGTCTTGGAGATATCTTGGTCAAACTTTTTAAGTGAGATGGAAGTTGCCAAGGATCTAGACGATCTACTTGCAGCTCATGAGAAATATATGAATTCAATTGTAGAAAAATCTCTCCTTGGAGAACTCTCTCAGTCCCTTTACAAATCACTAATAGTAATATTTGATCTTATATTACGTTTTCGGAGCCATGCAGATATTTTATACGAAGGCATTCACGAGTTGCAAGCAAGAATCACAGAGTCCTCCCTATCCTCTCGAGACCAGAAGAAAACACGAAAGCAATTGAATGATAAGTCTGCAGAAGATGGGTCCTGGATTGCTGATGGGAGGAAAGCCTTAACACAACGTGCTGGTGAATTTCTCCGTAAAATGGAACAAGATCTAGATGCAATTTCTAAGGAGTATTCATCATTGCAAGAGGAATTCATTTCTCAGCTGCCTGTACAGCAGCATGTTGATCTGAAATTTCTCTTTTTCCGTCTTGACTTCAATGAATTTTATAGACGGGTTGTGTCCTAG 2544 0.421 MDDEEEQQKLPDLVKALIHHLLSQNLPPNSQPLNPNSSQFQNSLRYAHRILTSHLTPSITPDAAAIAESIKRRLATEGRSSEALSFADLYTKFASKATDVDNKWALLHLFNIISQDRKTAVNSQSHLDASVLLPNLTLSDNNIRLRIENKGWDDGVVVLARDPRNRREVAFREYVKLVKEENDVTEEAMVTDVLYACQGVDGKYVKFDNENNDYVFLDSIRVSRATTSMVHKLCELGVLFKKVIGYIEQSLGRSPAEDVGTVGQAFCSALQDELSDYYKLLAVLEAQSSNPIPLLSETVSSENYLSLRRLANWLAEPLVKMRLMADLVEKCRVLRGGAMAGAIHLHARHGDPMVHEFMKRLLQRVCSPLFEIVRRWVLEGELEDIFSEFFIVGQPVKAESLWREGYRLHDAMLPSFISASLAQRILRTGKSINFLRVCCEDRGWAHAATEVATDTGATARRGGFGYGETDTLESLVDEASKRIDKHLLDVIYERYKFKEHCLAIKRYLLLGQGDFVQYLMDIVGPELSVPANTISSFKLAGLLETAIRASNAQYDDPDILDRLRVKMMPHESGDRGWDVFSLEYDARVPLDTVFTESVMARYLRIFNFLWKLKRVEHALIGAWKTMKPNCITSNSFNRLQGAVKMQLVSALRRCQVLWVEINHFISNLQYYIMFEVLEISWSNFLSEMEVAKDLDDLLAAHEKYMNSIVEKSLLGELSQSLYKSLIVIFDLILRFRSHADILYEGIHELQARITESSLSSRDQKKTRKQLNDKSAEDGSWIADGRKALTQRAGEFLRKMEQDLDAISKEYSSLQEEFISQLPVQQHVDLKFLFFRLDFNEFYRRVVS 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03682 847 Coils Coil 267 287 - -
Trre13g03682 847 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 10 842 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
Trre13g03682 847 Pfam Gamma tubulin complex component N-terminal 190 493 IPR041470 -
Trre13g03682 847 Gene3D - 498 841 IPR042241 -
Trre13g03682 847 Pfam Gamma tubulin complex component C-terminal 499 842 IPR040457 GO:0043015
Trre13g03682 847 Coils Coil 796 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03682 Trre-Chr13 44445664 44448296 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03682 K16570 - gmx:100784710 1351.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03682 13 44445664 44448296 Trre13g03682 13 44445664 44448296 ECH