Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03577 ATGACAGAACCACCACCACCATCAACCGAACCACCTTCATTACCACCATCAACACCATCAACAACCGTTATTCATCCACGTCGCGAACCATTCGAACACGGTTTATTACCAATTCCGAAACTCATCTTCTCCGACCCCACACAAACCCTAATTTCATTCAAACATAAGCTTCTTCAATCATCTTCCAACAATCGAGTTGACTCCGCCGCGGTTTCTGACTCTCTTCAGATCTCGGTTGAACAAGCCAGACTCGTTCTCGATACTATCGCTTCGATTTTACCTTATGACTCTGAATCTGATACCGTCGATATTCATGATCTCGTTTTGTTTCTATACATTCAATCTTATAAGAGGCTTCTTCCTCGTACGCATAAGGATTCCGCCGCTGTTGCTGATGTTTGGCCTTCTACTTCCGCCTTTGATGGTTACTTGTCCGCTCTCTCACCGCTTCAGCTTGTAAGGAGCAATAGTAAGCGGTTTACGCCGTCGCAGGCTGATGAAGAAGCACATCAGTTGTCTTATCTGCAAAAGCATTTGGCTAACATTGTGTCTCTTCTAGCAGAGCCTGTGGAGGGGGAAAGTGAAGAATCTCTGGTTTTAACCATGGATAGATTCGAGCACCTTGGTCTTCTTATTCAATACGGTGATAAAGGCTCTGAAGGAAATTCTTTGAGTCAATCTTCTCCATTTTTTGCAAACTCGGATCCTGACATGCCTGCTGTTCCCGTACCTGCTTCCCAAGTTCATGATTGGCTTCTGGAGAATATAGCTTCTGCTTTGGAGTATATTGCTGAACGGACTTCTTCTAAAGAAAATGGCCCAGTTAGTGCCCCTGATCAGGATGTTGCTATGACTGATGCATCCACTGTCTCAGTTAAGGTCTCAACAAGTGCTAGGGGTGCAAGTTTCATTGAAGGGATTTCTAAATCGTCATATGCTAAACATGCATCTGACATTAAAGGTTCCTCCGTTAAGGTTCTAAATTGCCATGAATCTGCCATTTACATCTTAGCACCTTTGAGATATGCCACCATCTATGGATGTTCAGATGCGACAATATTTATTGGAGCAGTTGGAAAGGCTGTGAGAGTAGAACACTGTGAACGAGTTCATGTTATTGTAGCAGCAAAACGAATTTGTATTGCTAACAGCCGTGAATGTGTTTTCTTTTTGGGAGTGAATCAGCAACCCCTTATTGTCGGTGATAACCATAAGTTGCAGGTGGCTCCCTTTAATACCTTTTACTCCCAGTTGGAGGAACATATGAATGAAGTTGGAGTTCTGCCCACAGTGAATCGTTGGGATGAACCTATAGCATTGGGAATAGTTGATCCCCATGATTCACTATCTCATCCAGCAGGTGTCTCCGATGTTCAAACTGAGTCTGCTACTAGGGTGGACCCTGATCAGTTCACTAATTTTGTGATTCCAAACTGGCTTGGAGGAGAGTCCACCGGTTCTACAAAAGACAACCCATTCACATTACCGGAGGCTTATATGGCATCTCAACAAAGAAATGAAAAAAATTTAGGGGAGATAAGGCAACTGCTACGAGAAGCACCTTTAGAAGAAAGTCGTAAACGAGAATTGTCGTCTGCACTTCATGTGTATTTTAAGGACTGGTTATATGCTTCTGGTAACATTCGTCAGCTTTACTATCTACAAGGAGATTGA 1674 0.4325 MTEPPPPSTEPPSLPPSTPSTTVIHPRREPFEHGLLPIPKLIFSDPTQTLISFKHKLLQSSSNNRVDSAAVSDSLQISVEQARLVLDTIASILPYDSESDTVDIHDLVLFLYIQSYKRLLPRTHKDSAAVADVWPSTSAFDGYLSALSPLQLVRSNSKRFTPSQADEEAHQLSYLQKHLANIVSLLAEPVEGESEESLVLTMDRFEHLGLLIQYGDKGSEGNSLSQSSPFFANSDPDMPAVPVPASQVHDWLLENIASALEYIAERTSSKENGPVSAPDQDVAMTDASTVSVKVSTSARGASFIEGISKSSYAKHASDIKGSSVKVLNCHESAIYILAPLRYATIYGCSDATIFIGAVGKAVRVEHCERVHVIVAAKRICIANSRECVFFLGVNQQPLIVGDNHKLQVAPFNTFYSQLEEHMNEVGVLPTVNRWDEPIALGIVDPHDSLSHPAGVSDVQTESATRVDPDQFTNFVIPNWLGGESTGSTKDNPFTLPEAYMASQQRNEKNLGEIRQLLREAPLEESRKRELSSALHVYFKDWLYASGNIRQLYYLQGD 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03577 557 ProSiteProfiles C-CAP/cofactor C-like domain profile. 278 427 IPR017901 -
Trre13g03577 557 MobiDBLite consensus disorder prediction 1 22 - -
Trre13g03577 557 SMART carp 329 366 IPR006599 -
Trre13g03577 557 SMART carp 367 401 IPR006599 -
Trre13g03577 557 Gene3D - 301 464 IPR016098 -
Trre13g03577 557 PANTHER UNCHARACTERIZED 20 555 IPR039589 -
Trre13g03577 557 MobiDBLite consensus disorder prediction 1 19 - -
Trre13g03577 557 Pfam Tubulin binding cofactor C 321 436 IPR012945 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03577 Trre-Chr13 43554587 43561620 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03577 K16810 - gmx:100780410 945.266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03577 13 43554587 43561620 Trre13g03577 13 43554587 43561620 ECH