Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03515 ATGGAAAAACCGCTGCCACTCTTCATCTTCCAAATCATCTTATTATTTCTTCTCACCCAATCACTTCCTGCCACATCATCACACTCTCCAAAACCCGTTACATTTTCCGTCGCCGAATTCGGAGCAACCGGCGACGGCGTCCACTACGACACCGTTTCAATCCAGTCAGCCATCGACTCATGTCCATCCTCCATCCCCTGCCGCGTCACCTTCCCGGCACCGGGGAAGTACCTGACAGCAACCGTATTCCTCAGATCCGGCGTGGTGCTGAACGTGGAAACCGGCGCCACCATCTTCGGCAGTCCGAAACTGGAAGATTATCCGAAGGAGTCGTCGAGGTGGTATGTGGTGTTGGCGGAGAATGCGACGGATGTTGGAATTGAAGGCGGCGGTGTTGTCGATGGACAGGCGGAGAAATTTGTAGTGAGATATAATGAGAGGAAGAATGTAATGGTGAGCTGGAATGAGACTGGGAGTTGTTTGGGTGATGAATGCAGACCTAGATTAATCGGTTTTCTTGGATGCAAGAATGTTAAAATCTTCAACATTACACTCAATCAACCTGCTTATTGGTGCTTACACTTGGTACGAAGTGAAAACATATCAATTCATGATATTGCAATTTATGGAGACTTGAATATACCAAACAACGATGGAATTGACATTGAGGACTCAAATAACACGGTAATCACTCGATGCCACATTGATACAGGTGATGATGCAATCTGTCCAAAATCATCCACTGGCCCTCTTTACAACTTAACAGTCACCGATTGTTGGATTCGATCCAAATCTTCTGCAATCAAATTTGGCAGTGCTAGTTGGTTTGAATTTAAGCATTTTGTCTTTAACAATATCACTATTGTTGATTCTCATAGAGGGCTTGCATTTCAGATCCGTGATGGAGGAAATGTAAGTGACATTGTCTTCTCAAACATAAATATAAGCACAAGATACTATGATCCATTATGGTGGGGGAGAGCAGAGCCTATCTATGTCACAACTTGCCCAAGAGACTCAACCTCAAAAGAAGCTTCAATCTCAAATGTTCGCTTCATCAACATCACCGCAAATTCTGAAAATGGAATCTTCCTCGCTGGCTCAAAGAGAGGATTGTTGAGAAATTTGAGCTTCATCAACATGAATATCACTTACAGAAGGTTCACGGGTTATGCCGGTGGATTGTTTGACTATAGGCCAGGATGCCAAGAATTGGTTAAACACAAGACTGCTGGGATTATGATGGAACACATTGAAGGTCTTGAGGTTAGAAATGTAGAAATGAGATGGGAAAATAATGAACTAGAGCAATGGAATAATCCTATGGAGTTCAAACCATCTACTGTGAATAACATACACTTCTCTAATTTTAATTCTGTTTTGTATTCAAATAGCGAATCAAGTAAATCAAGTTAA 1416 0.4258 MEKPLPLFIFQIILLFLLTQSLPATSSHSPKPVTFSVAEFGATGDGVHYDTVSIQSAIDSCPSSIPCRVTFPAPGKYLTATVFLRSGVVLNVETGATIFGSPKLEDYPKESSRWYVVLAENATDVGIEGGGVVDGQAEKFVVRYNERKNVMVSWNETGSCLGDECRPRLIGFLGCKNVKIFNITLNQPAYWCLHLVRSENISIHDIAIYGDLNIPNNDGIDIEDSNNTVITRCHIDTGDDAICPKSSTGPLYNLTVTDCWIRSKSSAIKFGSASWFEFKHFVFNNITIVDSHRGLAFQIRDGGNVSDIVFSNINISTRYYDPLWWGRAEPIYVTTCPRDSTSKEASISNVRFINITANSENGIFLAGSKRGLLRNLSFINMNITYRRFTGYAGGLFDYRPGCQELVKHKTAGIMMEHIEGLEVRNVEMRWENNELEQWNNPMEFKPSTVNNIHFSNFNSVLYSNSESSKSS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03515 471 SUPERFAMILY Pectin lyase-like 14 393 IPR011050 -
Trre13g03515 471 Gene3D - 17 392 IPR012334 -
Trre13g03515 471 SMART pbh1 225 246 IPR006626 -
Trre13g03515 471 SMART pbh1 305 327 IPR006626 -
Trre13g03515 471 SMART pbh1 342 367 IPR006626 -
Trre13g03515 471 SMART pbh1 251 272 IPR006626 -
Trre13g03515 471 SMART pbh1 198 224 IPR006626 -
Trre13g03515 471 PANTHER PECTIN LYASE-RELATED 28 440 - -
Trre13g03515 471 Pfam Glycosyl hydrolases family 28 61 385 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03515 Trre-Chr13 42857768 42860704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03515 33 463 Glycoside Hydrolase AT3G57790 67.195 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03515 - - gmx:100794954 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03515 13 42857768 42860704 Trre13g03515 13 42857768 42860704 ECH