Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03514 ATGAAAGTTAATGAAGTGGTTGATAATCGTTCCACTGATTTGGAGAAAGAGCAAAAAGAAGGGTTTGAAGATATGTCAGATACCGACACAACAAAAGATTCAGTATCATCACAAGGTGATTCTTTCACAAATGAAGATGAGAAAGTGGAGAAAGCTACGAAAGATCCAAAAAGTAAGGTTAGAACGAATTCTTTAGAAAACAATCGCGGACCAAGGGAGAGATCTGATAGGAAAGCAAATAAGCTGCAATCAAAGGTATCAGGTAGCAATCAAAAGAAACCTATAAACTCGAATAAAACGCCTTCAAGAGTTACAAACAAAAATACGTCAAACAATTCCAAGACCGCGAAAGTTCCTGTTAAAGTTTTGTTGGAGTCTTCTGAAGGACAACAAGTTGATGAAAAACCTGTTATCGAGGTCAAGGAAATTGATATCTTGGATGGATCCTCCAATGGTGCTCAGGTCAAGGAAATTGATGTCTTGGATGGATCCTCCAATGGTGCTTACAGTGTAGGAAGTGAAGATGAAAATCGTGAAACCGTTAATGCTGAAGAAAATAGTGAACGTGAAAATGCCGCGGCGGCGGCTTTGGAATTGAAAATTAAAGAAATGGAATCACGAATTGAAAATCTCGAAGAGGAATTGAGAGAAGTTGCAGCTCTTGAGGTGTCACTTTATTCTATTGTACCAGAGCATGGAAGCTCGGCACACAAGGTGCACACACCTGCTCGGCGTCTTTCTAGGCTCTATATACATGCTTGTAAGCACTGGACCACGAAAACGAAAGCAACGATAGCCAAGAATACAGTTTCTGGTCTTATTTTGGTTGCTAAATCTTGTGGTAACGATGTTTCAAGGTTAACTTTTTGGTTGTCAAACACCATTGTGCTAAGAGAGATAATTTCGCAAGCATTTGGGAATGCATGTCAAGTTAGTCCCATTATGAGGTTGGCCGGGTCAAATGGATCTACCAAGAGGAATGATGGGAAATCTGCATCACTGAATAGGAAAGGTTTCTCAAATGGTAAATTGGGAAATGGTTTTATGCAGACCGGTGAAGATTGGCAGGAGACAGGAACCTTTATATTTTCCTTAGAAAGAGTAGAATCGTGGATCTTTTCTCGGCTAGTAGAGTCAGTGTGGTGGCAGGCTTTGACTCCTTATATGCAATCTTCGGTTGAGGACTCGTGTTCAAATAAATCCAATGGAAGGCTGCTAGGACCTGCTCTTGGTGATCACAATCAAGGAAACTTTTCCATTAATCTGTGGCGAAACGCTTTCCAAGATGCTTTTCAACGACTTTGTCCTGTTCGAGCAGGAGGGCACGAGTGTGGTTGTTTGCCTGTGATGGCAAGAATGGTCATGGAACAGTGCATAGATAGACTCGATGTTGCAATGTTCAATGCAATTCTTCGGGAATCAGCTCTTGAGATACCAACTGATCCTATATCAGATCCGATTGTCGATTCAAAAGTTTTGCCAATCCCAGCAGGAAACTTAAGCTTTGGATCTGGTGCACAGCTAAAAAATTCCGTTGGAAATTGGTCTAGATTGCTCACTGATATGTTTGGCATTGATGCTGAAGATTGTCCGGAAGAATATCAGGAGAATGGCGAGAATGATGTAAGGCAGGGTGGAGACGGCGAACCTAAACCGTTTGTTCTCCTTAATGACTTGAGTGACCTTCTAATGCTCCCAAAAGACATGCTTATGGATAGACAAGTCAGACAGGAGGTATGTCCTTCCATCAGTCTTTCATTGATTATACGCGTCCTTTGTAACTTCACTCCGGATGAGTTCTGTCCGGATCCTGTTCCAGGAACCGTCTTGGAGGCCTTGAACGGGGAGACTATTATTGAGCGAAGATTGGCAGCCGAGTCTATGCGAAGCTTCCCTTATGCTGCGGCTCCAGTTGTGTATACACCTCCCTCTTCAGTCAATGTGGCAGAGAAAGTTGCAGAGGCAGGAGGAAAGTGCCACCTGACGAGGAATGTATCGGCTGTTCAAAGGAGAGGATATACAAGTGATGAAGAACTTGAAGAACTTGATTCGCCGCTTACATCTATCATTGATAAGGTTCCTTCCTCTCCAACAGTCACTACTAATGGAAAGCAAGGGAATCACACCACCACAAATGCTAGATATCAACTACTTCGTGAAGTTTGGTCTATGTGA 2175 0.4253 MKVNEVVDNRSTDLEKEQKEGFEDMSDTDTTKDSVSSQGDSFTNEDEKVEKATKDPKSKVRTNSLENNRGPRERSDRKANKLQSKVSGSNQKKPINSNKTPSRVTNKNTSNNSKTAKVPVKVLLESSEGQQVDEKPVIEVKEIDILDGSSNGAQVKEIDVLDGSSNGAYSVGSEDENRETVNAEENSERENAAAAALELKIKEMESRIENLEEELREVAALEVSLYSIVPEHGSSAHKVHTPARRLSRLYIHACKHWTTKTKATIAKNTVSGLILVAKSCGNDVSRLTFWLSNTIVLREIISQAFGNACQVSPIMRLAGSNGSTKRNDGKSASLNRKGFSNGKLGNGFMQTGEDWQETGTFIFSLERVESWIFSRLVESVWWQALTPYMQSSVEDSCSNKSNGRLLGPALGDHNQGNFSINLWRNAFQDAFQRLCPVRAGGHECGCLPVMARMVMEQCIDRLDVAMFNAILRESALEIPTDPISDPIVDSKVLPIPAGNLSFGSGAQLKNSVGNWSRLLTDMFGIDAEDCPEEYQENGENDVRQGGDGEPKPFVLLNDLSDLLMLPKDMLMDRQVRQEVCPSISLSLIIRVLCNFTPDEFCPDPVPGTVLEALNGETIIERRLAAESMRSFPYAAAPVVYTPPSSVNVAEKVAEAGGKCHLTRNVSAVQRRGYTSDEELEELDSPLTSIIDKVPSSPTVTTNGKQGNHTTTNARYQLLREVWSM 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03514 724 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 175 722 IPR021827 GO:0005643
Trre13g03514 724 MobiDBLite consensus disorder prediction 1 116 - -
Trre13g03514 724 MobiDBLite consensus disorder prediction 82 116 - -
Trre13g03514 724 Coils Coil 187 221 - -
Trre13g03514 724 MobiDBLite consensus disorder prediction 166 188 - -
Trre13g03514 724 MobiDBLite consensus disorder prediction 43 81 - -
Trre13g03514 724 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03514 Trre-Chr13 42836857 42840023 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03514 - - psat:127126272 1115.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03514 13 42836857 42840023 Trre13g03514 13 42836857 42840023 ECH