Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03497 ATGAGCATCTCATCACTGCGTTTCGATTCTCGCACACTATGCACTCCTCAACCTCAACACCCATTCACCTACAACAACCCATATCGTTCAACTCCAAACGTCGTCGTTTGTGCCGCCAAACCACTTGCATCTCCTCCTACTAAACTCACCGCCGCCGATCCTCTCGCCGGTCGAATTGAGTCTCTTAGTCAGGTCTCCGGTGTTCTCGGTTGTCAATGGGGCGATGAGGGTAAGGGAAAGCTTGTTGATATCTTAGCTCAACACTTCCAAATCGTTGCTCGTTGTCAGGGTGGAGCTAATGCTGGGCATACCATTTATAATTCGGAGGGGAAAAAGTTTGCCCTTCATCTTGTTCCTTCTGGTATCCTTAATGAGGATACGCTGTGTGTTATTGGTAATGGTGTTGTAGTACACCTGCCGGGGTTGTTTCAAGAAATTGACAACCTTGAGTCAAATGGGGTCTCTTGCAAGGGAAGGATATTGATTTCAGATCGGGCTCACCTCTTGTTCGATTTCCACCAAACAGTGGATGGGCTTAGAGAAGCTGAGCTCTCTAAATCTTTCATTGGCACCACCAAGAGAGGCATTGGACCGTGCTACTCTAGCAAAGCTAACCGTAATGGGATTAGAGTTGGTGATTTGAGGTACATGGAAACTTTACCTCAGAAGCTTGATCTTTTGTTATCAGATGCAGCATCGAGGTTCAAAGACTTTAAGTATGGTCCGGATGTGTTAAGGGAAGAAGTTGAGAAATACAAGAGGTACGCTGAAAGATTGGAACCCTATATTGCTGATACCGTGCATGTCATGAATGAAGCCATAACACAAAAGAAGAAGATCTTGGTTGAAGGAGGACAAGCAACCATGCTGGACATTGATTTTGGCACTTATCCCTTTGTTACTTCTTCTAGCCCATCAGCTGGCGGGATATGCACCGGTCTTGGTATTGCTCCAAGAGTAGTTGGTGATTTAGTGGGTGTGGTGAAAGCATACACCACAAGAGTTGGTTCTGGTCCTTTTCCAACTGAAATTTTGGGTCCAGGAGGTGATCTCCTCAGATTTGCTGGGCAGGAGTTTGGCACGACTACTGGACGCCCCCGACGATGTGGCTGGTTGGATATTGTTGCATTAAGATACTCATGTCAGATCAATGGTTTTTCAGCATTGAATCTCACTAAGCTGGATGTTTTGGATGGTCTTGATGAGATACAATTGGGTGTCTCCTATAAACATGAGGATGGCACTCCAGTCAAATCATTCCCATCAGATCTTCGTCTTCTCGAGCAATTGAAGGTGGAATATGAAACGATTCCTGGATGGAAGACTGACATTTCTTCCATTAGAAACTATTCTGACCTTCCAAGAGCTGCACAGTTGTATGTAGAAAGGATAGAAGAGCTTGTTGGTGTCCCTATTCACTACATTGGTGTTGGGCCTGGACGTGATGCCCTCATATTCAAATGA 1464 0.4542 MSISSLRFDSRTLCTPQPQHPFTYNNPYRSTPNVVVCAAKPLASPPTKLTAADPLAGRIESLSQVSGVLGCQWGDEGKGKLVDILAQHFQIVARCQGGANAGHTIYNSEGKKFALHLVPSGILNEDTLCVIGNGVVVHLPGLFQEIDNLESNGVSCKGRILISDRAHLLFDFHQTVDGLREAELSKSFIGTTKRGIGPCYSSKANRNGIRVGDLRYMETLPQKLDLLLSDAASRFKDFKYGPDVLREEVEKYKRYAERLEPYIADTVHVMNEAITQKKKILVEGGQATMLDIDFGTYPFVTSSSPSAGGICTGLGIAPRVVGDLVGVVKAYTTRVGSGPFPTEILGPGGDLLRFAGQEFGTTTGRPRRCGWLDIVALRYSCQINGFSALNLTKLDVLDGLDEIQLGVSYKHEDGTPVKSFPSDLRLLEQLKVEYETIPGWKTDISSIRNYSDLPRAAQLYVERIEELVGVPIHYIGVGPGRDALIFK 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03497 487 Pfam Adenylosuccinate synthetase 68 485 IPR001114 GO:0000166|GO:0004019|GO:0006164
Trre13g03497 487 CDD AdSS 64 486 IPR001114 GO:0000166|GO:0004019|GO:0006164
Trre13g03497 487 FunFam Adenylosuccinate synthetase 328 487 - -
Trre13g03497 487 SMART adenylsucc_synt 65 486 IPR001114 GO:0000166|GO:0004019|GO:0006164
Trre13g03497 487 Gene3D Adenylosuccinate Synthetase, subunit A, domain 1 68 327 IPR042109 -
Trre13g03497 487 PANTHER ADENYLOSUCCINATE SYNTHETASE 56 486 IPR001114 GO:0000166|GO:0004019|GO:0006164
Trre13g03497 487 ProSitePatterns Adenylosuccinate synthetase GTP-binding site. 72 79 IPR018220 GO:0005525
Trre13g03497 487 FunFam Adenylosuccinate synthetase, chloroplastic 164 262 - -
Trre13g03497 487 ProSitePatterns Adenylosuccinate synthetase active site. 195 206 IPR033128 -
Trre13g03497 487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 485 IPR027417 -
Trre13g03497 487 Gene3D Adenylosuccinate Synthetase, subunit A, domain 3 328 487 IPR042111 -
Trre13g03497 487 Hamap Adenylosuccinate synthetase [purA]. 1 487 IPR001114 GO:0000166|GO:0004019|GO:0006164
Trre13g03497 487 Gene3D Adenylosuccinate Synthetase, subunit A, domain 2 164 262 IPR042110 -
Trre13g03497 487 NCBIfam adenylosuccinate synthase 68 485 IPR001114 GO:0000166|GO:0004019|GO:0006164
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03497 Trre-Chr13 42612774 42615533 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03497 K01939 - gmx:100792329 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03497 13 42612774 42615533 Trre13g03497 13 42612774 42615533 ECH