Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03451 ATGGATCAGAATGATTCATATTCATATATTGGAGAAGCACCTGCATTTCTTGTTGATGATCTGCAGGATGGACCTCTTAATGGTCTTGAATTAAAAAATGGAACTTGCAAGACAACTACTACCGTTGGCGATAAAACGTATGTCACTGTTGGAGCTGGTGATGGAACTTTGTCCATTGACGTTCAAATTTTTGACCGTAGTCTTGGAGAATGGGTTCACCCAACTGTGCTAGGTACCAAACCCTTATCGTGCAAAGGTCACTCTGCGGTGCTTTGTGAAAACCGGATTCTAGTTCTTAAGAAGGGTTCTAAATCAGATGATCAAATATGGTTCCTAGAGGTGGACACCGAATATGTTAGGCAGCAGCGAAAAAAATTGGGGACCGAGGTTGTTGCGTGGAGTAAGGGTGTGGTAGGCAATGCTGAGAAACCTATTGTTATTAGTGGTCCTTCTGGAGTTGGTAAAGGAACACTGATATCAATGCTGATGAAGGAATTCCCATCAATGTTTGGTTTTTCGGTGAGCCATACAACCCGTGCTCCAAGAAATATGGAGAAAGATGGGGTCCATTACCATTTTACCGATAAGAGTGTGATGGAGAAAGAGATTAAAAATGGAAAATTTCTCGAATTTGCATCTGTCCATGGTAATTTGTACGGGACCAGTGTTGAAGCTGTTGAAGTGGTAGCAGATGCAGGAAAAAGATGTATTCTTGATATTGATGTTCAAGGAGCAAAATCTGTGCGGGCTAGTTCTCTTGAAGCAATATTCATCTTTGTCTGTCCACCATCAATGGAAGAGCTTGAGAAGCGCCTTCGTGACAGAGGGACTGAGACAGAAGAACAGATCCTGAAGCGACTGCGTAATGCCAAAGCTGAGATTGAGCAGGGGACATCTTCTAATATATTTGATTTCATGTTATACAATGACAAACTCGAGGAGTCTTATGAGAAACTTAAGAAATTATTGGGACTTGATGGTTTTGTCGCTGCTTCACCTAAATCAGCACCTAGAGAGATTAATCTACCATTGGATCATTCAGTGTCTAAAATTGATGACAAAATCATCATCTCTTCCGGACTAGAGAAGGAGACAAAGAATTTGATCATGTTGGATGTTTCCTCACTAAAAGGCGGTGCACCTGGAAGGACAAGAGGGCTTGATTTTCAAGTCATAGGGGCCTCTTTGGATCTGCTTTGCTAA 1203 0.4173 MDQNDSYSYIGEAPAFLVDDLQDGPLNGLELKNGTCKTTTTVGDKTYVTVGAGDGTLSIDVQIFDRSLGEWVHPTVLGTKPLSCKGHSAVLCENRILVLKKGSKSDDQIWFLEVDTEYVRQQRKKLGTEVVAWSKGVVGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRNMEKDGVHYHFTDKSVMEKEIKNGKFLEFASVHGNLYGTSVEAVEVVADAGKRCILDIDVQGAKSVRASSLEAIFIFVCPPSMEELEKRLRDRGTETEEQILKRLRNAKAEIEQGTSSNIFDFMLYNDKLEESYEKLKKLLGLDGFVAASPKSAPREINLPLDHSVSKIDDKIIISSGLEKETKNLIMLDVSSLKGGAPGRTRGLDFQVIGASLDLLC 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03451 400 ProSiteProfiles Guanylate kinase-like domain profile. 142 324 IPR008144 -
Trre13g03451 400 Hamap Guanylate kinase [gmk]. 140 327 IPR017665 GO:0004385|GO:0006163
Trre13g03451 400 CDD GMPK 144 320 - -
Trre13g03451 400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 323 IPR027417 -
Trre13g03451 400 PANTHER GUANYLATE KINASE-RELATED 57 335 - -
Trre13g03451 400 Gene3D - 32 136 IPR015915 GO:0005515
Trre13g03451 400 Gene3D - 138 326 IPR027417 -
Trre13g03451 400 ProSitePatterns Guanylate kinase-like signature. 177 194 IPR020590 -
Trre13g03451 400 NCBIfam guanylate kinase 143 323 IPR017665 GO:0004385|GO:0006163
Trre13g03451 400 Pfam Guanylate kinase 142 323 IPR008145 -
Trre13g03451 400 FunFam Guanylate kinase 2 135 327 - -
Trre13g03451 400 SUPERFAMILY Galactose oxidase, central domain 34 119 IPR011043 -
Trre13g03451 400 SMART gk_7 141 327 IPR008145 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03451 Trre-Chr13 42274646 42277547 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03451 K00942 - gmx:100808931 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03451 13 42274646 42277547 Trre13g03451 13 42274646 42277547 ECH