Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03394 ATGACATTTTGTTCAAGGGAACTCATTCATGAAAAAGATGGCCGTACCGTACTATTTGGAATTGGTCATTCCGTAGAGGATAAATCTAATAATGGGTCAAGTCAAGGGGGGCCAAGACAAAGAGCAGAAGCTTTGGCTGCTTTAAATAATGCATTCAATTCATCTCCTGAGACACCATCCAGTGCGGATAAATTGAATAGCCTAAATCAAGGAGGGCATAGGCAAAGGGCAGAAGCTTTAGCTGCCTTAAACTCTGCATTTAGTTCATCATCCGGAACTAAACCTGTTACACCTAGAAAATCTCCAAGAGGTCAAGGATCACAAAGAGCAGCAGCGGTTGCTGCTCTTTCTAATGTTCTTACTGCTGAAAAGAAGACACATTCACCTGACAGTTCTCCTGTGGCAACCAGTAGTCCTGTTGTGGAAAGTAGCCCTTTTGATGCTAAAAGTGAAAGTGTCCCATCTGAATCAGAAGGTCGTGAAGAAGTTACCGAAAGCAAGGAGACAGAGGAACCTGCTTCTGAAACTGGTAGCAATGGAAATTCGGAATCAAAACAAGAAAATGTGGAGGATGGCAGTGATAGTCAAAATAGTCAAAGTGTCTTCAGTTATGAGCAATTAAAAGCTAAATCTGGGAGTCCTCTATCTGGGGTTGATCTTAAACGCAGGGAGGCTTATCTGTCAGACCAAGAGTTTGAAACTGTATTTGCAATGACAAAAGAAGCATTCAATAAGTTACCAAGATGGAAGCAAGACATGCTGAAAAGAAAATTTGATTTGTTCTAG 786 0.4135 MTFCSRELIHEKDGRTVLFGIGHSVEDKSNNGSSQGGPRQRAEALAALNNAFNSSPETPSSADKLNSLNQGGHRQRAEALAALNSAFSSSSGTKPVTPRKSPRGQGSQRAAAVAALSNVLTAEKKTHSPDSSPVATSSPVVESSPFDAKSESVPSESEGREEVTESKETEEPASETGSNGNSESKQENVEDGSDSQNSQSVFSYEQLKAKSGSPLSGVDLKRREAYLSDQEFETVFAMTKEAFNKLPRWKQDMLKRKFDLF 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03394 261 MobiDBLite consensus disorder prediction 82 104 - -
Trre13g03394 261 Pfam Villin headpiece domain 226 261 IPR003128 GO:0003779|GO:0007010
Trre13g03394 261 SMART VHP_1 226 261 IPR003128 GO:0003779|GO:0007010
Trre13g03394 261 ProSiteProfiles Headpiece (HP) domain profile. 196 261 IPR003128 GO:0003779|GO:0007010
Trre13g03394 261 MobiDBLite consensus disorder prediction 153 172 - -
Trre13g03394 261 MobiDBLite consensus disorder prediction 121 151 - -
Trre13g03394 261 Gene3D Villin headpiece domain 180 261 IPR036886 GO:0003779|GO:0007010
Trre13g03394 261 MobiDBLite consensus disorder prediction 52 217 - -
Trre13g03394 261 MobiDBLite consensus disorder prediction 52 73 - -
Trre13g03394 261 MobiDBLite consensus disorder prediction 173 210 - -
Trre13g03394 261 SUPERFAMILY VHP, Villin headpiece domain 196 261 IPR036886 GO:0003779|GO:0007010
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03394 Trre-Chr13 41535009 41537817 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03394 - - gmx:100787208 327.02