Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03388 ATGCTTCACAGTGTCACTCCCATTTCAATGGCCACAACACCACCTCACTACACTCAACTCGGTGGCGCCACCGATTCAAGTCACCCTCCAAAATCCACAATCACACGCAAGAAGAACTCCAACGAACTAGCATTCAAGGAGAAAAAGGATGGTTTCGTCGATTACGACAAAGGACAACACGAAGTATCCACCAGAATCGCTGGCCTCCGCAAAGAAGATATCCCGGCACGCTACCGTCTCCGTGTCGCCGGAAACCGATTTCAAAAGGACTGGACTGTGTCGGAGGTTGTAGACTCTGTCCTGTCCCTCACCCTCCGTGATGACGTTGAAGGCTTACTCAACCGTTGGATAGGTCGCTTCGCACGCAAGAATTTCCCCTTTCTAATTAGGGAGTTGACACAGAGAGGTTCAATTGAACATTGTAACTTAGTTTTCAGCTGGATGAAAGAGCAGAAGAATTATTGTGCTAGAACAGATATATACAACATGATGATTAGGTTGCATGCTAGGCATAATAGAACGGATCAGGCTCGTGGGTTGTTTTTCGAGATGCAAAAATACAGGTGTAAACCTGATGCTGAGACTTATAATGCTCTTATTAATGCGCATGGTCGAGCTAGACAGTGGCGTTGGGCTATGAATATCATGGAAGACATGCTGCGTGCAGCTATTCCGCCAAGTCGGTCAACTTACAACAACTTGATTAATGCCTGTGGATCTAGTGGAAATTGGAAAGAAGCACTTAATATTTGCAAGAAAATGACTGACAATGGAGTTGGACCTGATCTTGTCACTCACAATATTATGTTATCTGCATTTAAAAGTGGAACTCAGTATTCAAAAGCTTTGTCGTACTTTGAACTAATGAAGGGAACTCACATTCGACCAGACACAACCACACTCAGTATCATCATTGATTGTCTAGTAAAGCTTAAACAATATGACAAAGCCATTGATATTTTTAATTCCATGAGGGAAAAGAAGTCAGAATGTCACCCTGATGTTGTAACATTCACTAGTATCATTAAATTGTATTCTGTATCTGGACAAATTGAAAATTGTGAGGCTGCATTCAATATGATGCTTGCAGAAGGGCTGAAACCAAGTATAGTCTCATACAATGCACTACTAGGTGCATATGCTGCTCGTGGGATGGAAAATGAGGCCCTTCGGGTTTTTAATGAGATAACACAAAATGGTTTCCGCCGAGATATTGTATCTTATACATCTCTACTTAATGCTTATGGAAGATCACGAAAGCCTCAAAAAGCAAGGGAAATATTCAAAATGATAAAGAGAAACAACTTGAAGCCAAACATTATCACTTACAATGCACTGATTGATGCCTATGGGTCTAATGGTTTGCTTGAAGAAGCAATTGGAATCTTGCGAGAAATGGAACAAGATAAGATTCATCCGAATGTTGTCTCAATATGCACACTCTTGGCTGCCTGTGGACGGTGTTGTCAGAAGGTGAAGATTGATACTGTGCTATCAGCAGCTGAGATGCGAGGCATTAAATTGAACACAGCGGCATATAATTCAGCTATAGGAAGCTATATTAATGTGGGGGAATATGACAAAGCTGTAGACTTGTATAAAACTATGAGGGAGAAAAAAATAAGATCTGATTCTGTTACTTACACTGTCTTGATTAGTGGTTGTTCTAAGATGTCAAAATTTGGGGAAGCCCTATCTTTTATGGAAGAAATGATGCATCTAAAACTTCCTATGTCTAAAGAGGTCTACTCATCCGTCATATCTGCCTATAGCAAACAGGGTCAAATCACAGAAGCAGAATCTACATTCAACTTGATGAAATCATCGGGTTGCAGTCCAGATGTGGTTACATATACTGCAATGCTTGATGCTTACAACACAGCGGAGAAGTGGGAGAAAGCATATGCACTCTTTGAAGAAATGGAAGCAAATGACATCAAGCTAGATACCATCGCATGTGCAGCTCTGATGAGAGCTTTTAACAAAGGTGGCCAACCAGGAAGGGTCTTTAGTCTTGCACAAAGTATGAGAGAAAAAGACATTCCTTTAAGTGATACCATATTTTTTGAAATGGTATCTGCCTGTAGCTTATTACATGATTGGAAGACAGCCGTTGATGTGATCAAGTACATGGAGCCCTCACTTCATGTAATTTCATCTGGATGTTTGAATTTGTTCCTGAACTCTTTAGGAAAAAGTGGAAAGATTGAAACTATGTTGAAGCTATTCTTCAAAATGTCAGAATCGGGTGCCGATGTTAACATCAATACTTATTCTATTTTATTGAAAAACCTTTTATCATCTGGAAATTGGAGGAAGTATTTAGAGGTACTACAATGGATGGAGGATGCAGGAATTCATCCCTCATATGAAATGTACCATGATATATCCTCCTTTTCAGAAAAGTGCTGTGGGGCTGAAAATGCTGCTGTCATAAAAGAAAGGCTTGAATCCTTGAAAAGAAAAGCTGAGGATCAAATTTCTCCAAGCCAACCTTGTGAATCTCATGTTTGA 2514 0.4033 MLHSVTPISMATTPPHYTQLGGATDSSHPPKSTITRKKNSNELAFKEKKDGFVDYDKGQHEVSTRIAGLRKEDIPARYRLRVAGNRFQKDWTVSEVVDSVLSLTLRDDVEGLLNRWIGRFARKNFPFLIRELTQRGSIEHCNLVFSWMKEQKNYCARTDIYNMMIRLHARHNRTDQARGLFFEMQKYRCKPDAETYNALINAHGRARQWRWAMNIMEDMLRAAIPPSRSTYNNLINACGSSGNWKEALNICKKMTDNGVGPDLVTHNIMLSAFKSGTQYSKALSYFELMKGTHIRPDTTTLSIIIDCLVKLKQYDKAIDIFNSMREKKSECHPDVVTFTSIIKLYSVSGQIENCEAAFNMMLAEGLKPSIVSYNALLGAYAARGMENEALRVFNEITQNGFRRDIVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIITYNALIDAYGSNGLLEEAIGILREMEQDKIHPNVVSICTLLAACGRCCQKVKIDTVLSAAEMRGIKLNTAAYNSAIGSYINVGEYDKAVDLYKTMREKKIRSDSVTYTVLISGCSKMSKFGEALSFMEEMMHLKLPMSKEVYSSVISAYSKQGQITEAESTFNLMKSSGCSPDVVTYTAMLDAYNTAEKWEKAYALFEEMEANDIKLDTIACAALMRAFNKGGQPGRVFSLAQSMREKDIPLSDTIFFEMVSACSLLHDWKTAVDVIKYMEPSLHVISSGCLNLFLNSLGKSGKIETMLKLFFKMSESGADVNINTYSILLKNLLSSGNWRKYLEVLQWMEDAGIHPSYEMYHDISSFSEKCCGAENAAVIKERLESLKRKAEDQISPSQPCESHV 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03388 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 438 IPR002885 -
Trre13g03388 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Trre13g03388 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 614 648 IPR002885 -
Trre13g03388 837 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 691 793 - -
Trre13g03388 837 Pfam Pentatricopeptide repeat domain 250 309 IPR002885 -
Trre13g03388 837 Pfam Pentatricopeptide repeat domain 742 793 IPR002885 -
Trre13g03388 837 Pfam Pentatricopeptide repeat domain 391 453 IPR002885 -
Trre13g03388 837 Pfam Pentatricopeptide repeat domain 332 381 IPR002885 -
Trre13g03388 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 439 473 IPR002885 -
Trre13g03388 837 NCBIfam pentatricopeptide repeat 336 369 IPR002885 -
Trre13g03388 837 NCBIfam pentatricopeptide repeat 230 262 IPR002885 -
Trre13g03388 837 NCBIfam pentatricopeptide repeat 724 750 IPR002885 -
Trre13g03388 837 NCBIfam pentatricopeptide repeat 546 576 IPR002885 -
Trre13g03388 837 NCBIfam pentatricopeptide repeat 264 298 IPR002885 -
Trre13g03388 837 NCBIfam pentatricopeptide repeat 582 615 IPR002885 -
Trre13g03388 837 NCBIfam pentatricopeptide repeat 371 404 IPR002885 -
Trre13g03388 837 NCBIfam pentatricopeptide repeat 195 227 IPR002885 -
Trre13g03388 837 NCBIfam pentatricopeptide repeat 406 440 IPR002885 -
Trre13g03388 837 NCBIfam pentatricopeptide repeat 300 329 IPR002885 -
Trre13g03388 837 NCBIfam pentatricopeptide repeat 441 475 IPR002885 -
Trre13g03388 837 NCBIfam pentatricopeptide repeat 160 193 IPR002885 -
Trre13g03388 837 NCBIfam pentatricopeptide repeat 512 544 IPR002885 -
Trre13g03388 837 NCBIfam pentatricopeptide repeat 616 650 IPR002885 -
Trre13g03388 837 Pfam Pentacotripeptide-repeat region of PRORP 525 678 IPR033443 -
Trre13g03388 837 Gene3D Tetratricopeptide repeat domain 103 239 IPR011990 GO:0005515
Trre13g03388 837 SUPERFAMILY TPR-like 297 638 IPR011990 GO:0005515
Trre13g03388 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 544 578 IPR002885 -
Trre13g03388 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Trre13g03388 837 FunFam Pentatricopeptide repeat-containing protein At2g41720 662 837 - -
Trre13g03388 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Trre13g03388 837 MobiDBLite consensus disorder prediction 1 38 - -
Trre13g03388 837 Coils Coil 806 826 - -
Trre13g03388 837 Gene3D Tetratricopeptide repeat domain 661 831 IPR011990 GO:0005515
Trre13g03388 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 543 IPR002885 -
Trre13g03388 837 Pfam PPR repeat 160 189 IPR002885 -
Trre13g03388 837 FunFam Predicted protein 402 517 - -
Trre13g03388 837 FunFam Pentatricopeptide repeat-containing protein At2g41720 95 255 - -
Trre13g03388 837 Pfam PPR repeat family 191 238 IPR002885 -
Trre13g03388 837 Gene3D Tetratricopeptide repeat domain 328 397 IPR011990 GO:0005515
Trre13g03388 837 Gene3D Tetratricopeptide repeat domain 470 574 IPR011990 GO:0005515
Trre13g03388 837 Gene3D Tetratricopeptide repeat domain 252 327 IPR011990 GO:0005515
Trre13g03388 837 Gene3D Tetratricopeptide repeat domain 398 469 IPR011990 GO:0005515
Trre13g03388 837 Gene3D Tetratricopeptide repeat domain 575 647 IPR011990 GO:0005515
Trre13g03388 837 SUPERFAMILY TPR-like 140 337 IPR011990 GO:0005515
Trre13g03388 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Trre13g03388 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Trre13g03388 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Trre13g03388 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 579 613 IPR002885 -
Trre13g03388 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Trre13g03388 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 754 788 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03388 Trre-Chr13 41371166 41377228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03388 334 797 Glycosyltransferase AT1G05670 22.414 4.70e-35 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03388 - - gmx:100814643 1400.57