Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03337 ATGTCCGATGCATTTTGCAGCGATTGCAAGCGAGCGACGGAGGTGGTGTTCGATCATTCCGCCGGTGATGCTGTTTGTTCGGAGTGTGGTCTCGTGCTTGAATCTCACTCCATTGATGAAACCTCTGAGTGGCGAACGTTCGCGAATGAATCCGGCGACAACGATCCCGTACGTGTCGGAGGTCCGAACAATCCTCTTCTAACCGACGGCGGTTTATCTACTGTCATTGCCAAACCTAACGGTGCATCTGGAGATTTTCTCTCGTCTTCTCTCAGTCGCTGGCAGAATCGCGGTTCAAATAATGATCGTGGCTTGATCCTTGCTTTCAAAACTATTGGCACCATGTCCGAGAGGTTGGGACTTGTTCCGACCATCAAGGATCGAGCTAATGAGATATATAAGCGGGTTGAAGATCAGAAGTCTAGCAGGGGAAGAAATCAGGATGCATTATTGGCTGCTTGCCTCTACATTGCTTGTCGACAAGAAGACAAGCCGCGCACTGTAAAGGAAATTTGCTCGATTGCCAATGGAGCTACCAAAAAGGAAATTGGCCGAGCAAAAGAATACATTGTGAAACAACTGGGTTTGGAGAATGGTGGTCAATCTGTAGAAATGGGAACAATTCATGCTGGGGACTTTATGAGACGATTTTGTTCTAATCTCGGTATGAATCACCAAGCTATTAAAGCTGCTCAAGAATCTGTTCAGAAATCAGAAGAATTTGATATAAGGAGAAGTCCCATATCAATTGCTGCAGCAGTTATATACATCATTACTCAGCTTTCGGATGATAAAAAACCTCTCAAAGATATATCAGTTGCCACAGGAGTCGCAGAAGGAACCATTAGGAACTCTTACAAGGATCTTTATCCCCATGTTTCAAAGATAATACCAAGCTGGTATGCAAAGGAAGAGGATTTAAAGAACCTTTGCAGCCCTTAA 942 0.4469 MSDAFCSDCKRATEVVFDHSAGDAVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGPNNPLLTDGGLSTVIAKPNGASGDFLSSSLSRWQNRGSNNDRGLILAFKTIGTMSERLGLVPTIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSIANGATKKEIGRAKEYIVKQLGLENGGQSVEMGTIHAGDFMRRFCSNLGMNHQAIKAAQESVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPSWYAKEEDLKNLCSP 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03337 313 CDD CYCLIN_TFIIB_rpt1 108 195 - -
Trre13g03337 313 FunFam transcription initiation factor IIB 91 197 - -
Trre13g03337 313 FunFam Transcription initiation factor IIB 5 193 - -
Trre13g03337 313 Pfam Transcription factor TFIIB repeat 205 291 IPR013150 GO:0017025
Trre13g03337 313 Pfam Transcription factor TFIIB repeat 103 185 IPR013150 GO:0017025
Trre13g03337 313 PRINTS Transcription initiation factor IIB signature 277 291 IPR000812 GO:0006352|GO:0070897
Trre13g03337 313 PRINTS Transcription initiation factor IIB signature 179 194 IPR000812 GO:0006352|GO:0070897
Trre13g03337 313 PRINTS Transcription initiation factor IIB signature 19 39 IPR000812 GO:0006352|GO:0070897
Trre13g03337 313 PRINTS Transcription initiation factor IIB signature 213 231 IPR000812 GO:0006352|GO:0070897
Trre13g03337 313 PRINTS Transcription initiation factor IIB signature 41 54 IPR000812 GO:0006352|GO:0070897
Trre13g03337 313 PRINTS Transcription initiation factor IIB signature 55 76 IPR000812 GO:0006352|GO:0070897
Trre13g03337 313 PRINTS Transcription initiation factor IIB signature 245 261 IPR000812 GO:0006352|GO:0070897
Trre13g03337 313 PRINTS Transcription initiation factor IIB signature 152 171 IPR000812 GO:0006352|GO:0070897
Trre13g03337 313 Gene3D - 5 193 - -
Trre13g03337 313 Gene3D - 209 312 - -
Trre13g03337 313 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 4 310 IPR000812 GO:0006352|GO:0070897
Trre13g03337 313 SUPERFAMILY Zinc beta-ribbon 4 50 - -
Trre13g03337 313 ProSitePatterns Transcription factor TFIIB repeat signature. 144 159 IPR023486 -
Trre13g03337 313 Pfam TFIIB zinc-binding 6 47 IPR013137 -
Trre13g03337 313 SUPERFAMILY Cyclin-like 105 196 IPR036915 -
Trre13g03337 313 FunFam Transcription initiation factor IIB 209 312 - -
Trre13g03337 313 ProSiteProfiles Zinc finger TFIIB-type profile. 2 34 IPR013137 -
Trre13g03337 313 SUPERFAMILY Cyclin-like 208 309 IPR036915 -
Trre13g03337 313 SMART cyclin_7 212 291 IPR013763 -
Trre13g03337 313 SMART cyclin_7 110 192 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03337 Trre-Chr13 40891260 40894579 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03337 K03124 - csav:115709913 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03337 13 40891260 40894579 Trre13g03337 13 40891260 40894579 ECH
Trre13g03337 13 40891260 40894579 Trre1g02012 1 16029705 16034191 PCT