Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03319 ATGGCTTGGGATCTATGGAGTTCATCTTTTGATCAAGTTTCTTATGATCGTAACTACTCGGAGATTCTTGAGTGGCATTGTGATTACTTTGGCTGTGGCCGTGATGAGATTGAGGAAGATGCTTTGAATGTGGAATCATGTGTTCAGGTTTTGAGAATTTTGCTAACCAAGGCCGATACTGAAATTGAGGAACTTGAAAAGGATCTCACGTGCCTTCAGAATGAATTGGCCTGGTCTGAGAATGAAAACTGGCCTGAAATATGTTGTAGTGCTTTGACTGAAAGAATCAACTGGCTTGATGTTGCGGTTACCAATTTGAAGAGTGATCATGCCAATGATGCAGATATGCAGCTACTGTTAAGTAGTGAACCTGCTGAGACACTTCATGAAATAGTGAAGGCTTTACATAAAGATCAATGTCAAGATACGCATGGCCAGCAGCGTATAGAAGAGAACATCGTGAATCCAATTGTGAATGTTACTGAACATGCACCAGACAATGGCTCTAACAATATTGACTCAAATGGTATCATAAGGGAGGGAGGAGAAGAAGACTTTGGAACTTCAGAACCGTCTAAAAGCTCAGAACTTCTTTTAGAGCTTCATGAAAATAGATCAGATGATCCTGAAAAGACTGAGACCAAGGAATTGCTCGCATTATCTCCTGGGAGAAGTCCTGATTTGGAGGTTGTTAACTCTGTACCTTACCATTCTGATGGGATGATATCGGATACATTAGATGATAAAGTTACCGGAGATGAGGATGTCAGGCAAAGCCAACTTGTTACTACAGATACATATAAAATCTTGAATCCGTTTTTGTCCAAGGGAAATGCAAATATTCCAAGTGAAGCCAAGGAAGAAAATACAGCTCTCAAAGAAAATGTCTGCTCAGATGATGATAGACTTGCAATTATCAAAAGGAGTGTACTCATTCTTGCGGAGTCAGGTCAAAGCTTGAATCCGATTTTGTCCAAGGGAAACAAAAATATTCCAAGTGAAACCAAGGAAGTAACTGTCAAAGAAAATGTCAGCTCCGATGATCATAGACTGGCGATTATCAAGGGGAGCCAACTCATTGCTAAAAATACAGGTCAAATCTTGAATCCATTTTCGTCTAAGCGAAGTGGAAATCTTCCAAGTGAAGCCAAGATTGTGCAGGAAGAAAATACGAATCTCATTGATTATCGCGTTGAAATTATTAAGACGATGGAAATGTATTCTAGTTCCAGATTTGGTACTGGCCAACAAGAAGAAACTGGAAATTCTGATTTAGCTACAAAACTGTGTGATTTTGCTCCAAAAACTGCAAGAAGACTCTGCAGGAAAGAATCCAAGGTTGCTCCAGATGAAGATTTGGAATCTATGTGTAATTTTGTTCCAAAAACTGCACGAAGAGCCTACAAAAAAGAATCCAAGGTTGCTCTAGAGGAAGATTTGGAATCTATGGATGTACCCCTAGAAATTGTTTATCCTAAAAAATTGTGTTTTGCTGATACAGAATCAAGTGCCTTTAAAGAAAATACTAGCAACAATGCCCTGCAAGCGGTAAAAATTGAAAAGGCCACCCTTAGTGCTGAAAATTCTGTATCAATTTCACTGCCAGGGATGCAAATGAAGAATGTCCTTTGTACTAGGTTAAAGCTGACGGATGAAGAGAAACCACAAGCCCAAGACCTAAAATCCAAAGTGGCTGTTAACTTTAACAAATCTCAGGGAAAGAAAAAACCTGAATTTGGGGCATGCTCTGCCAAAGAACTGTTACCTTTAGAAGTTTTTAGAAGTGCATCTAAGAATGTATCAACCAAGAGGAAGCGGAAACCAAAAAACGAGTTCATGAATAGTAAAATTACTGAGAAGGCTATTGTTCTTTCTGACAGCGATGATGATGTATCAACCAAGAGGCAGCAGAAACCAAAGAGCTGTACTGCTGCTACAACCTTAAACGAGCCCACAAATACTAAAGCCACTAAGAGGTCTGTGCAGCTGGGCCAGCATGAAACTGCTGGTAATGCTATTGTTCCTTATGACAGCGAATTTTCTGAATTGCAAAAGAAAAGACGAGTTTCAGAATTGTCTATTACCTCAAAAGTACAAAATTCAATTGTTGACTACTTGGACACAACAAACTCAGATAATGGAAAATCGCCTGCGTTGGTGGATGATCATAATGAGATCTCAGCTTTGCTCCCTATTACCTCGACAGAAACCACAGAAACCTTGAAGAAAAAGAAATTGCCTGAATTGAGGCTCATGGCAAAGACGCTCAAAATGATAGGCTACGCTAAGTTTCGGAAAGAAGTTTTGATTGAGGAATTACTTAAGCAACTCAGTAGCTGCTGA 2343 0.3952 MAWDLWSSSFDQVSYDRNYSEILEWHCDYFGCGRDEIEEDALNVESCVQVLRILLTKADTEIEELEKDLTCLQNELAWSENENWPEICCSALTERINWLDVAVTNLKSDHANDADMQLLLSSEPAETLHEIVKALHKDQCQDTHGQQRIEENIVNPIVNVTEHAPDNGSNNIDSNGIIREGGEEDFGTSEPSKSSELLLELHENRSDDPEKTETKELLALSPGRSPDLEVVNSVPYHSDGMISDTLDDKVTGDEDVRQSQLVTTDTYKILNPFLSKGNANIPSEAKEENTALKENVCSDDDRLAIIKRSVLILAESGQSLNPILSKGNKNIPSETKEVTVKENVSSDDHRLAIIKGSQLIAKNTGQILNPFSSKRSGNLPSEAKIVQEENTNLIDYRVEIIKTMEMYSSSRFGTGQQEETGNSDLATKLCDFAPKTARRLCRKESKVAPDEDLESMCNFVPKTARRAYKKESKVALEEDLESMDVPLEIVYPKKLCFADTESSAFKENTSNNALQAVKIEKATLSAENSVSISLPGMQMKNVLCTRLKLTDEEKPQAQDLKSKVAVNFNKSQGKKKPEFGACSAKELLPLEVFRSASKNVSTKRKRKPKNEFMNSKITEKAIVLSDSDDDVSTKRQQKPKSCTAATTLNEPTNTKATKRSVQLGQHETAGNAIVPYDSEFSELQKKRRVSELSITSKVQNSIVDYLDTTNSDNGKSPALVDDHNEISALLPITSTETTETLKKKKLPELRLMAKTLKMIGYAKFRKEVLIEELLKQLSSC 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03319 780 Pfam Rho termination factor, N-terminal domain 741 777 IPR011112 GO:0006353
Trre13g03319 780 MobiDBLite consensus disorder prediction 162 176 - -
Trre13g03319 780 Coils Coil 48 82 - -
Trre13g03319 780 MobiDBLite consensus disorder prediction 161 195 - -
Trre13g03319 780 MobiDBLite consensus disorder prediction 178 195 - -
Trre13g03319 780 SMART Rho_N_2_a 740 779 IPR011112 GO:0006353
Trre13g03319 780 MobiDBLite consensus disorder prediction 626 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03319 Trre-Chr13 40633365 40638128 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03319 - - tpra:123888291 1094.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03319 13 40633365 40638128 Trre13g03319 13 40633365 40638128 ECH