Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03317 ATGGTTGGAAGCATTTTAGGAAAGATTAATAATAATACATACTCAAATGGGTCATCTCAAAATCATAATAATGGATTAGAGGATAAGCTTGCTGAGTTTAGGAGACTAATTGGCAAAAGTAATGGTGATCCATTAAGAATTGTGAGTGTTGGTGCTGGTGCTTGGGGAAGTGTTTTTGCAGCACTTTTACAAGATAGTTATGGTGAATTTAGAGACAAAGTACAAATCAGAATATGGAGAAGATCAGGAAGAAAAGTTGATAGAGAAACTGCTAAACATCTCTTTGAAGTTATTAATTCAAGAGAAGATGTTTTAAGAAGGTTGATAAGAAATTGTGCTTATTTAAAATATGTTGAAGCAAGACTTGGTGATAGGACATTATTTGCTGATGAAATTCTTAAAGATGGTCTTTGTTTGAATATGATTGATACTCCTGTTTGTCCTTTGAAAGTTGTTACTAATTTGCAAGAAGCTGTTTGGGATGCTGATATTGTTGTTAATGGTTTGCCTTCGACCGAAACTCGCGAGATTTTTGAAGAGATTAGTAAGTATTGGAAGGAGAGGATTAGTGTTCCTATTATAATTTCTTTGTCTAAAGGTATTGAAGCTGCATTGGAGCCTGTTCCTCATATTGTAACTCCTACAAAAATGATTCATCAAGCAACCGGAGTGCCTATGGAGAACATACTTTATCTTGGTGGTCCAAATATTGCCTCAGAAATCTACAACAAGGAGTATGCAAATGCAAGAATTTGTGGAGCTGAGAAATGGAGAAAACCTTTAGCAAAGTTTCTTAGACAACCACATTTTATTGTATGGGACAATAGTGATCTTGTCACTCATGAGGTCATGGGTGGATTGAAAAATGTCTATGCAATTGGAGCTGGAATGGTTGCATCCCTTACCAATGAGAGTGCTACTAGCAAATCAGTGTATTTTGCGCACTGTACTTCTGAGATGATATTCATCACTCACTTGTTAACCGAAGAGCCTGAGAAACTTGCTGGTCCATTACTAGCTGATACTTATGTAACATTGCTAAAAGGTCGTAACGCGTGGTATGGTCAAATGTTAGCTAAGGGTGAACTAAGCCCTGACATGGGTGTTAACATTAGTGGTAAAGGAATGATTCAGGGAGTATCTGCAGTGGAAGCATTCTTTGAACTTTTGAGCCAATCAAGCCTGAATGTGTTGCATCCTGAAGAAAAAAAGCATGTTGCTCCTGTTGAGCTTTGTCCTATCTTGAAGACACTCTACAAAATATTGATATCCAGGGAACAATCAACACAAGCTATTTTGAAAGCTCTGAGGGATGAAAATCTGAATGATCCGCGAGAACGCATTGCGATTGCACAAAGTCATGCTTTTTACAGGCCTTCACTTCTTGGACAACAATGA 1398 0.3741 MVGSILGKINNNTYSNGSSQNHNNGLEDKLAEFRRLIGKSNGDPLRIVSVGAGAWGSVFAALLQDSYGEFRDKVQIRIWRRSGRKVDRETAKHLFEVINSREDVLRRLIRNCAYLKYVEARLGDRTLFADEILKDGLCLNMIDTPVCPLKVVTNLQEAVWDADIVVNGLPSTETREIFEEISKYWKERISVPIIISLSKGIEAALEPVPHIVTPTKMIHQATGVPMENILYLGGPNIASEIYNKEYANARICGAEKWRKPLAKFLRQPHFIVWDNSDLVTHEVMGGLKNVYAIGAGMVASLTNESATSKSVYFAHCTSEMIFITHLLTEEPEKLAGPLLADTYVTLLKGRNAWYGQMLAKGELSPDMGVNISGKGMIQGVSAVEAFFELLSQSSLNVLHPEEKKHVAPVELCPILKTLYKILISREQSTQAILKALRDENLNDPRERIAIAQSHAFYRPSLLGQQ 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03317 465 Gene3D - 138 273 - -
Trre13g03317 465 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 277 IPR036291 -
Trre13g03317 465 PANTHER GLYCEROL-3-PHOSPHATE DEHYDROGENASE 43 439 - -
Trre13g03317 465 FunFam Glycerol-3-phosphate dehydrogenase [NAD(+)] 139 273 - -
Trre13g03317 465 FunFam Glycerol-3-phosphate dehydrogenase [NAD(+)] 277 437 - -
Trre13g03317 465 Pfam NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 149 251 IPR011128 GO:0016616|GO:0046168|GO:0051287
Trre13g03317 465 Gene3D - 27 117 - -
Trre13g03317 465 Pfam NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 277 431 IPR006109 GO:0005975|GO:0047952
Trre13g03317 465 PRINTS NAD-dependent glycerol-3-phosphate dehydrogenase signature 49 66 IPR006168 GO:0006072|GO:0009331|GO:0047952
Trre13g03317 465 PRINTS NAD-dependent glycerol-3-phosphate dehydrogenase signature 270 294 IPR006168 GO:0006072|GO:0009331|GO:0047952
Trre13g03317 465 Gene3D - 277 437 IPR013328 GO:0016491
Trre13g03317 465 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 277 432 IPR008927 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03317 Trre-Chr13 40629082 40632498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03317 1 464 Acyl Lipid Metabolism Gene Families AT2G41540 86.638 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03317 K00006 - gmx:100810871 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03317 13 40629082 40632498 Trre13g03317 13 40629082 40632498 ECH