Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03309 ATGTCGCCGGCGGCGATGAACTTCTCCTCCGATACAACTCCACATTCTCCTCTCCGTTTTACTCCTTTCAACGCCGACGCCACCACCCCTTCCGGTTCCACCGCTCGTGGAAAGTCGAGACCGAGACTGACTAAACTCAGAAAACAATCGGCGGCTCAGAACGCAAGGTCTAGGTCCAGAACGCAAATCGATGATGAAGTCTCTGGCTCCGGTTTCGGTTTCAATCCTTTTCGCTCCGATCAGGTAAGTGATAATTTTAAAGGAGTAGAGAGTGATGCTGGTTCTTTTGTGTTTAGTGCTAGAAAGATTGATTCTGATTCTGTTAGGGATTTGAATTCGGAACAGAAAGAAACAGAGGTTAGGAAAAGTGGCGGTGTTGAATTTGTGTTTAGTGCTAAAGAAATCGATTCTAAATCGAATTCAGTTCTTGATGGAGAGGAAAAGAGTAGTGAAAGAAAGACATTGAATTCAGAAGGGGAGAAGGGGAAAGTTAATTTTACAGGGTTTGTTTTTGGTGCTGGTAGAAATGATTTGCATTCTAGTTTTAATATAGAAAAAGGAAAATCTAGTGTACCTGTAGGGAATTCCGTGGTTCATGTTCGTAAGGAGAGGGAATGTAAAACTGAATTTGTGTTTGGTGATAAGCATAGAGATATTAAAATGCCAAGTTTTAATGCAGAAAAGAAGGAATCTGTTGACAGCATGAGAAATTCGGTTAATGGAAGTGGTGTTTTTCATGCTGCGACAGAAACAAATAGTAGTTTTGATAAAGATGCTGATAAGTGTGGGAATCTGGGTAATGATGTTAAGTCGAAGAGTGGAAAGGGAAGTACTAATGGTTTTTCTGCTACTTTTAATAACATTTATGATAATAAATTAGTAGATGAGATAAAGAAACTGAACATCAACCATCCTGAGGGTGTCCATATTGCCAGAGATTCTACGAAGTCGGGTGTAAGTAGTAGCAATGGTTTTGTGTTTGGAGGAAGTGACACGGTTTCTAGTGTTAGTTCGGGAACTAATACTAGCGGTGAACAATTGTATACCAATGTTGATTTTGAGAATATTGGACGGCAATATGCCAAAGCTGGCAGAACAGATGATGTTCAAAATGGAACTGCTTGTGGTATTGCCCAGGATGCAACAGGAATACCCTGTTCTAAGACATCAACCAGTCAGGGTGGGATCAGAGATTTCCAGTGTGGCAAGATTCCAGAATTTCACGTGTCTGAAGATGCTCAAGTGAATGGAGCTGAAGAGTCTTGTACGGACTTTAAACCTACGGCATGGGATCCTTCTTGTTTTAAAGATAACTTATTTTCTAACCTACATAAAACATTTGAATCCACACATAAGAGTAAATCTTCCAAAGAAAAAGGATCAAATTTCCTGAGGCGAAAATCGAAGCCACATTCCTTGAATAAGAAACAGACAAGGATAGATAATTTGCCAAAGGAAAACAGTTCACTTGAAACCCCTGAATCTTCTGGTGGCTTCTCTCCAATGGATTTTTCTCCGTATCAAGAAACAGCAGTGGATGTTCAAGATCTAAAGGCTTCAGAAGAATTAAATGCGCTGCACCCATCAATTTCCACTGATTATAAAGATGACCTCACCTCAAACTCTGAAAAGAAAAAAGCAGATATATTTCATTTTGTTGATGGTCTGGGTGATTCGAAGGAGAAAGATTTTGCATTTTCTGCAGGATCCACTGTAGAGAGTACTTCATCATTATATAAGCGTAAACAGAAGAAGAAATTTAGGAGGAAAATGGGGCTTGTCTCTCCAAATGTGAACAGAAAGCCTGTATCTTCTGTACAATTTTCTCCACTTACCACTGCCAACGTGTCATCACTTTCTGATGTAACGGACAAGTCTCAGATGAATGATCAGCTTGCGGAAGGGGGTGATACGTCACTGGCTACAATTGAAGCTGCCTGTTACCAATGGAGACTCAGGGGTAACCGTGCTCATAAAGCTAAGGATCTTTCTAAAGCTGAGGAATTCTACACAAAAGGAATAGATTCTGTCCCTTCCAGTGAAAGATCAGGATGCTACATTAAGCCTCTTTTACTGTGCTATAGCAACCGTGCAGCAACACGTATTAGTCTTGGAAGGATTAGGGAAGCTCTAGAGGATTGCATGATGGCTACTTCTTTGGACCCTACCTTTCTGAAAGTACAGATGAGAACAGCTAACTGTCACCTTTTGCTAGGGGAATTTGAAAATGCTCAGCAATGTTATAACAAGTGCCTGGAATCAGGTAAAGTTGTTTGTTTGGATCGGAGAGTAATAGTAGAAGCAGCTGAAGGTTTACAGAAAGCTCAGGAAGTGGTTAAGTGTATGAATGACGCTGCTGAACTTTTGAAGGAGAGGACTTCTGATGCAGCTGGTTCTGCTTTAGAACTACTTACAAAGGCATTGTCAAAGAGTTTATACTCAGAAAGGTTGCTCCAAATGAAGGCCGAGGCTCTGTATTTGCTTCAAAAGTATGATGCTGCAATTCAGCTGTGTGAACAGAGTCTGAAGCTTGCAGAAAAGAATTTTGCCTCGGGAAACAGTGCAAACAATTCCAATAATTCCACGCATGATAGTTACTCTAGTGTAAAATTGTGGAGATGGTCATTGATATCAAAGTGTTACTTTCGTTTGGGGAGGCTGGATGCATCACTTAATATTATTGAAAAATTACGGCAAACAGCATCTGTCAATGACAAGTGTGTGATTGATAACATTGAAGACTTGCTGTCATTAGCTGCTACTATACACGAACTTCTGGACCACAGGAGAGCAGGAAATGAGAACTTTAAATTGGGAAAGTATGCAGCAGCAGTAGAGAACTACACTGCCGCTTTATCTAGTAATATCAAATCACGCCCTTTTGCAGCAATATGTTTTGGCAACCGTGCTGCTGCTCATCAAGCTTCAGGCCAAATTGCTGATGCCATTGCTGATTGCAGCATGGCTATGGCCCTTGATGGAAATTATGCAAAGGCAATATCTAGAAGAGCCACCTTGCATGAGATGGTTAGAGATTATGCACAAGCAGCTTGCGACCTCAGAAGACTTATTTCTGTTCTTGGATCTCAATCCAATGAAAAGGCCAAACACTCTGACTCACCAAATGGATCGCCCGGTGGGAAAGAATCAAGGCAAGCTCAACAACGTCTGCTTACTGTGGAAGATCAAGCCAAAATGGGGACCCCCTTGGACTTTTATCTCATTTTAGGAATTATGCCAGCTGATACAGCAGCTGATATCAAGAAGGCCTATCACAAGGCAGCTCTCAGACATCATCCAGATAAGGCTGGTCAGCTGTTGGCAAGAAGTGAAGTTGGGGATGAAGGCCGTGTATGGAAGGAAATTTCTCAGGAGGTGCACAAGGATGCTGACAGGCTTTTCAAAATGATTGGAGAGGCATATGCTGTACTTTCAGACACTGCCAAGCGCTCGGAGTATGATATGGAAGAGGACATAAGGAAAGCTTATAAACAAAGTAATGGAGGTGGCGCAAGCAGGAGATCTTCAGACGTTTATGGGAATGGAAGATCATCCGATGGTTATAGATCATCGTACGACAGAACTTCTAACAGACGATATGGATATCATTGGAGGACATATGGAGATTCATATTCTCGATGGTAA 3645 0.4148 MSPAAMNFSSDTTPHSPLRFTPFNADATTPSGSTARGKSRPRLTKLRKQSAAQNARSRSRTQIDDEVSGSGFGFNPFRSDQVSDNFKGVESDAGSFVFSARKIDSDSVRDLNSEQKETEVRKSGGVEFVFSAKEIDSKSNSVLDGEEKSSERKTLNSEGEKGKVNFTGFVFGAGRNDLHSSFNIEKGKSSVPVGNSVVHVRKERECKTEFVFGDKHRDIKMPSFNAEKKESVDSMRNSVNGSGVFHAATETNSSFDKDADKCGNLGNDVKSKSGKGSTNGFSATFNNIYDNKLVDEIKKLNINHPEGVHIARDSTKSGVSSSNGFVFGGSDTVSSVSSGTNTSGEQLYTNVDFENIGRQYAKAGRTDDVQNGTACGIAQDATGIPCSKTSTSQGGIRDFQCGKIPEFHVSEDAQVNGAEESCTDFKPTAWDPSCFKDNLFSNLHKTFESTHKSKSSKEKGSNFLRRKSKPHSLNKKQTRIDNLPKENSSLETPESSGGFSPMDFSPYQETAVDVQDLKASEELNALHPSISTDYKDDLTSNSEKKKADIFHFVDGLGDSKEKDFAFSAGSTVESTSSLYKRKQKKKFRRKMGLVSPNVNRKPVSSVQFSPLTTANVSSLSDVTDKSQMNDQLAEGGDTSLATIEAACYQWRLRGNRAHKAKDLSKAEEFYTKGIDSVPSSERSGCYIKPLLLCYSNRAATRISLGRIREALEDCMMATSLDPTFLKVQMRTANCHLLLGEFENAQQCYNKCLESGKVVCLDRRVIVEAAEGLQKAQEVVKCMNDAAELLKERTSDAAGSALELLTKALSKSLYSERLLQMKAEALYLLQKYDAAIQLCEQSLKLAEKNFASGNSANNSNNSTHDSYSSVKLWRWSLISKCYFRLGRLDASLNIIEKLRQTASVNDKCVIDNIEDLLSLAATIHELLDHRRAGNENFKLGKYAAAVENYTAALSSNIKSRPFAAICFGNRAAAHQASGQIADAIADCSMAMALDGNYAKAISRRATLHEMVRDYAQAACDLRRLISVLGSQSNEKAKHSDSPNGSPGGKESRQAQQRLLTVEDQAKMGTPLDFYLILGIMPADTAADIKKAYHKAALRHHPDKAGQLLARSEVGDEGRVWKEISQEVHKDADRLFKMIGEAYAVLSDTAKRSEYDMEEDIRKAYKQSNGGGASRRSSDVYGNGRSSDGYRSSYDRTSNRRYGYHWRTYGDSYSRW 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03309 1214 ProSiteProfiles dnaJ domain profile. 1071 1157 IPR001623 -
Trre13g03309 1214 MobiDBLite consensus disorder prediction 1 74 - -
Trre13g03309 1214 MobiDBLite consensus disorder prediction 1164 1193 - -
Trre13g03309 1214 Gene3D Tetratricopeptide repeat domain 924 1041 IPR011990 GO:0005515
Trre13g03309 1214 Gene3D Tetratricopeptide repeat domain 646 763 IPR011990 GO:0005515
Trre13g03309 1214 MobiDBLite consensus disorder prediction 483 501 - -
Trre13g03309 1214 ProSitePatterns Nt-dnaJ domain signature. 1134 1153 IPR018253 -
Trre13g03309 1214 MobiDBLite consensus disorder prediction 448 501 - -
Trre13g03309 1214 Coils Coil 828 848 - -
Trre13g03309 1214 SUPERFAMILY TPR-like 928 1026 IPR011990 GO:0005515
Trre13g03309 1214 SMART tpr_5 725 758 IPR019734 GO:0005515
Trre13g03309 1214 SMART tpr_5 963 996 IPR019734 GO:0005515
Trre13g03309 1214 SMART tpr_5 871 904 IPR019734 GO:0005515
Trre13g03309 1214 SMART tpr_5 925 958 IPR019734 GO:0005515
Trre13g03309 1214 SMART tpr_5 997 1030 IPR019734 GO:0005515
Trre13g03309 1214 SMART tpr_5 815 848 IPR019734 GO:0005515
Trre13g03309 1214 SMART tpr_5 647 680 IPR019734 GO:0005515
Trre13g03309 1214 SMART tpr_5 691 724 IPR019734 GO:0005515
Trre13g03309 1214 Coils Coil 772 792 - -
Trre13g03309 1214 MobiDBLite consensus disorder prediction 1168 1191 - -
Trre13g03309 1214 SUPERFAMILY Chaperone J-domain 1059 1153 IPR036869 -
Trre13g03309 1214 MobiDBLite consensus disorder prediction 1 38 - -
Trre13g03309 1214 PANTHER HEAT SHOCK PROTEIN DNAJ WITH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 17 1214 - -
Trre13g03309 1214 MobiDBLite consensus disorder prediction 46 74 - -
Trre13g03309 1214 Pfam Tetratricopeptide repeat 816 848 IPR019734 GO:0005515
Trre13g03309 1214 Pfam Tetratricopeptide repeat 732 753 IPR019734 GO:0005515
Trre13g03309 1214 CDD DnaJ 1071 1146 IPR001623 -
Trre13g03309 1214 SMART dnaj_3 1070 1149 IPR001623 -
Trre13g03309 1214 Gene3D Tetratricopeptide repeat domain 780 919 IPR011990 GO:0005515
Trre13g03309 1214 Pfam DnaJ domain 1071 1154 IPR001623 -
Trre13g03309 1214 MobiDBLite consensus disorder prediction 448 465 - -
Trre13g03309 1214 PRINTS DnaJ domain signature 1073 1091 IPR001623 -
Trre13g03309 1214 PRINTS DnaJ domain signature 1129 1149 IPR001623 -
Trre13g03309 1214 PRINTS DnaJ domain signature 1091 1106 IPR001623 -
Trre13g03309 1214 MobiDBLite consensus disorder prediction 1030 1054 - -
Trre13g03309 1214 SUPERFAMILY TPR-like 649 848 IPR011990 GO:0005515
Trre13g03309 1214 Gene3D DnaJ domain 1058 1174 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03309 Trre-Chr13 40523952 40533124 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03309 K09527 - gmx:100809278 1393.64