Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03307 ATGGTTTTAAAACTTATTGGTTTCTCAAAACATGTCATATTTATCAAAAAAAACATTATAATTCTAATCTTTAGTTTTATTCTAAACAGAGCTGACTCAGGCTGCAACAATTCTCTTACAACTTCATTTGTTCCAATTCCACCTTATGAAATCCTCTTATCACTGCAATCACAATCCCTTGATGGCTACTTGAGCTTAAAGGACAATGAAGGTGCTGCCAATGACTTTGGCAACATACACCATTTTCCTCCTTTAGCAGTGTTGCATCCAAAAACTGTTTCCGATATTTCACGAACTGTGAAGTATATTTTTGAAAAAGGATCTGATTCAGAGGTAAAGATTGCTGCTAGAGGTCATGGACATTCCCTTCAAGGTCAGGCACAAGCACATCAAGGACTAGTTATCAGCATGGAGTCACTAAAAGGTCCTGAAATGAAGATTCACACCGGCGAATTTCCTTTTGTCGATGTCTCAGCTGGTGAGTTATGGATTAACATTCTGCATGAGACTCTTAAATATGGATTGTCACCAAAATCTTGGACAGATTATCTTCACCTCACTGTTGGAGGTACTCTTTCGAATGCTGGAGTAAGTGGTCAAGCTTTTAGGCATGGACCTCAGATCAATAACATCTTCCAGTTGGAAGTTGTCACAGGAAAAGGAGAGGTGGTTACCTGTTCAGAAAACCGAAATGCTGACCTTTTTCATGGTGTTCTTGGAGGGCTTGGTCAATTTGGCATCATCACCAGAGCTAGAATTTCTCTTGAACCAGCACCAAAGATGGTGAAATGGATTAGGGTGCTGTATTCAGATTTCTCTGCATTTACAAGGGATCAAGAAAATTTGATATCACTCAAGGACACATTTGATTATATTGAAGGATTTGTAATCATAAATAGAACAGGCATTCTTAACGGTTGGAGATTATCTTTTGACCCCAAAGACCCACTTCAAGCCAGCCAATTCAATTCAGATGGGAAGACTTTCTACTGTCTTGAGATGGCAAAATACTTCAACCCTGATGAAGCTGAAGTCATGAATCAGGGTGTTGATCAGCTACTGTCACAGTTGAGTTATATTTCAGCCACACTGTTCCTATCAGAAGTTTCTTACGTAGAATTTTTAGACAGAGTGCATGTTTCTGAGATGAAGCTAAGAGCACAAGGCTTATGGGAAGTTCACCATCCTTGGTTGAACCTTCTGATCCCAAGGAGTGAGATTCATGACTTTGCTGAAGAAGTGTTTGGCAATATTCTTAAGGACACAAGTAATGGTCCCATACTCATTTATCCTGTCAACCAAACAAGGTGGAACAGTAAAACATCTTTTGTCACCCCAGAGGAAGATGTTTTCTACCTAGTGGCATTCCTAACATCAGCAGTCCCATTTTCAACTGGTGAAAACAGTTTAGAATACATTCTAAACCAAAACAAAAGGATCCTAGATTTCTGCACCAATGCCCAACTACATGTGAAGCAATACCTTGCTCATTACAGCACACAGGAAGAATGGCAAACTCACTTTGGGTCAAAATGGGGGGCATTTGTGGAAAGAAAAAGAGTCTATGACCCACTAGCATTACTTGCCCCTGGCCATAGAATCTTTCAAAAGGCAATGTCCACTTCCATTTAG 1632 0.3977 MVLKLIGFSKHVIFIKKNIIILIFSFILNRADSGCNNSLTTSFVPIPPYEILLSLQSQSLDGYLSLKDNEGAANDFGNIHHFPPLAVLHPKTVSDISRTVKYIFEKGSDSEVKIAARGHGHSLQGQAQAHQGLVISMESLKGPEMKIHTGEFPFVDVSAGELWINILHETLKYGLSPKSWTDYLHLTVGGTLSNAGVSGQAFRHGPQINNIFQLEVVTGKGEVVTCSENRNADLFHGVLGGLGQFGIITRARISLEPAPKMVKWIRVLYSDFSAFTRDQENLISLKDTFDYIEGFVIINRTGILNGWRLSFDPKDPLQASQFNSDGKTFYCLEMAKYFNPDEAEVMNQGVDQLLSQLSYISATLFLSEVSYVEFLDRVHVSEMKLRAQGLWEVHHPWLNLLIPRSEIHDFAEEVFGNILKDTSNGPILIYPVNQTRWNSKTSFVTPEEDVFYLVAFLTSAVPFSTGENSLEYILNQNKRILDFCTNAQLHVKQYLAHYSTQEEWQTHFGSKWGAFVERKRVYDPLALLAPGHRIFQKAMSTSI 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03307 543 SUPERFAMILY FAD-binding/transporter-associated domain-like 71 257 IPR036318 GO:0050660
Trre13g03307 543 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 84 119 IPR006093 GO:0016491
Trre13g03307 543 ProSiteProfiles PCMH-type FAD-binding domain profile. 80 258 IPR016166 GO:0071949
Trre13g03307 543 Pfam FAD binding domain 84 227 IPR006094 GO:0050660
Trre13g03307 543 Gene3D - 261 494 IPR016170 -
Trre13g03307 543 Gene3D - 69 535 IPR016167 -
Trre13g03307 543 FunFam Cytokinin dehydrogenase 2 261 494 - -
Trre13g03307 543 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 259 535 IPR015345 GO:0009690|GO:0019139|GO:0050660
Trre13g03307 543 SUPERFAMILY FAD-linked oxidases, C-terminal domain 259 535 IPR016164 GO:0003824|GO:0050660
Trre13g03307 543 PANTHER GULONOLACTONE OXIDASE 22 536 - -
Trre13g03307 543 Gene3D - 137 260 IPR016169 -
Trre13g03307 543 FunFam Cytokinin dehydrogenase 1 137 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03307 Trre-Chr13 40515160 40517729 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03307 K00279 - gmx:100777568 878.241