Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03302 ATGCCATTTTCGACTCGTCTCCATCTCTTTGCAAGACCTTTACTCTCTTCCTCTCTCCTTTACTCTTCTCGCCAGAATGGAATTAGAGAAATAATAAGCAGGATTGGCACGAACACCTGCTCGCTTTCGACTACAGTTTCAGCTGAAGCTTCAGATTTAGAATCTGATGAGATACACGATGATGTCAAAGCAGCAGAGAAAAGTAGTGCACTTTCCTTGGCTGTCTCACAACTTGCTAGTGAGTTTAGCAAGGAGTCAATGTTATCTTTGAACAAGTTTTTTGGTGTACGCTATGCCAACGTCATATCTACAGGCTCCTTGAAGCTTGACATAGCTCTTGGAATTGGAGGATTACCAAAGGGTAGGATTATTGAAATATACGGACGAGAAGCAGCTGGTAAGACAACGCTTGCCCTTCAAATTATCAAAGAAGCTCAAAAGCTTGGAGGATATTGTGCATATCTTGATGTAGAAAGTGCATTAGACCTTTCACTTGTGGAGTCAATGGGTGTAAATACCAAAAACCTTCTCATTTCAAATCCCGATTGTGCTGAAAATTTGTTGAGCATGGTTGATACACTAACAAAAAGTGGAGCTGTAGACGTGATTGTGGTTGATAGTGTTGCTGCTCTTGTCCCCAAATGCGAACTTGATCAATTGGGAGTTGTTACAAATCAAGATTTACATTCGCGAATGATGACTCAAGCACTACGGAAAATTAATTATTCATTATCCCGCTCCCAAGCTCTCTTAGTTTTTGTTAATCAGGTTAGATTTAGTCCTAAAGCATTTGGCGGAGGTGGACCTATGGAAGAGGTCACTTGTGGTGGAAACGCTTTGAGATTCTATGCAGCTGTTCGTTTGCGACTTTCGAGAATGGGATTGATCAAAACTGAAGATAAGGTTGAAGGTATTACGGTTTGTGCGCAAGTGGTAAAAAATAAACTAGCACCAGCATCAATGAAAAAGGCTGAACTTGGTATCAAATTTGGAAGAGGCTTTTGCCAAGAATCAGAGGTCTTTGATTTGGGTTGTGAACATGGACTCATTATGAAAGATGAAGGAAACTACTTTATTGAAGGGGAGGCTTTTAGTAGTAGAGAAGCTGCTGAACTATTTTTGACTAAAAATAAAAGGATTTGTGACAAGTTAGTTATGGACATGAAAAGACTTTATCTTTAA 1182 0.3976 MPFSTRLHLFARPLLSSSLLYSSRQNGIREIISRIGTNTCSLSTTVSAEASDLESDEIHDDVKAAEKSSALSLAVSQLASEFSKESMLSLNKFFGVRYANVISTGSLKLDIALGIGGLPKGRIIEIYGREAAGKTTLALQIIKEAQKLGGYCAYLDVESALDLSLVESMGVNTKNLLISNPDCAENLLSMVDTLTKSGAVDVIVVDSVAALVPKCELDQLGVVTNQDLHSRMMTQALRKINYSLSRSQALLVFVNQVRFSPKAFGGGGPMEEVTCGGNALRFYAAVRLRLSRMGLIKTEDKVEGITVCAQVVKNKLAPASMKKAELGIKFGRGFCQESEVFDLGCEHGLIMKDEGNYFIEGEAFSSREAAELFLTKNKRICDKLVMDMKRLYL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03302 393 SMART AAA_5 120 294 IPR003593 GO:0016887
Trre13g03302 393 ProSiteProfiles RecA family profile 2. 264 339 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Trre13g03302 393 CDD RecA 101 336 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre13g03302 393 ProSitePatterns recA signature. 279 287 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Trre13g03302 393 PRINTS RecA protein signature 156 185 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre13g03302 393 PRINTS RecA protein signature 190 219 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre13g03302 393 PRINTS RecA protein signature 276 304 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre13g03302 393 PRINTS RecA protein signature 363 380 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre13g03302 393 PRINTS RecA protein signature 228 257 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre13g03302 393 PRINTS RecA protein signature 310 339 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre13g03302 393 Gene3D - 97 391 IPR027417 -
Trre13g03302 393 Pfam recA bacterial DNA recombination protein 70 334 IPR013765 GO:0003697|GO:0005524|GO:0006281
Trre13g03302 393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 322 IPR027417 -
Trre13g03302 393 ProSiteProfiles RecA family profile 1. 98 257 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Trre13g03302 393 PANTHER RECA 50 390 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03302 Trre-Chr13 40452063 40456277 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03302 - - gmx:100777423 571.237