Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03256 ATGGGATCTGAATCAGAGTCTCAAATAATTCCCGTCGTTGACTTCTCCGACCAAAACATGAAACCTGGTACCAACACATGGCTCTCAGCTTGCAATGTTGTGAGGACTTCACTAGAAGACTACGGTTGTTTCGTGGCAAAATATGATAAAGTTGGCAAAGATCTTTGCAACTCTGTTGTGTCTTCAATTGAAGAATTATTTGCTCTTCCTTTGGAAACAAAAAAGCAAAAGACAAGTGATAGACCTTTTCATGGTTACTTAGGACAAGTCTCATGGCTTCCATTATATGAATCTATGGCCATCGAGGATCCATTAACTATGATTGAATGTCAAAAATTTGCACAAATCATGTGGCCTCAAGGAAATCATGGTTTCTGTGATATCATGAATGAGTACTCTAAACAATTGGGAGAATTAGACCATATAGCAAAGAGGATGGTGTTTGAAAGTTATGGTGTAGATATGAAAATATGTGATTCATTGATAGAATCAAGCAATTATCTCCTTCGATGCTTAAAATACAGACCACATGAGATAGATGAGAATGATATAGGATTGCAACCTCACTCAGACTTAACTATTATATCAGTAGTACATCAGCTCAATAATCTAAATGGATTGGAAATCAAATTGAAGAATGGAGAGTGGATTGGGATTCATGCCTCACCATCTTCCTTTGTTGTCATGGCAGGTGATGCATTCAAGGTGTTGAGTAATGGCAGAATAAGTACATGTGAACATAGAGTTATAATGAATGAAAAGAAAACAAGATACTCAACGGGACTATTTTCTTTTGGTAATAAGATAATGGATATACCAAAAGAGCTTATCAATGAGGAGCATCCCTTGCGTTACAAACCAACATTTGACAATTATGATTATCTTCGTTTCTATGAGAAAGAAAGAATCAACGAACCTAGTACACGAATTCAAGCTTATTGTGGAATTAATTAA 954 0.3595 MGSESESQIIPVVDFSDQNMKPGTNTWLSACNVVRTSLEDYGCFVAKYDKVGKDLCNSVVSSIEELFALPLETKKQKTSDRPFHGYLGQVSWLPLYESMAIEDPLTMIECQKFAQIMWPQGNHGFCDIMNEYSKQLGELDHIAKRMVFESYGVDMKICDSLIESSNYLLRCLKYRPHEIDENDIGLQPHSDLTIISVVHQLNNLNGLEIKLKNGEWIGIHASPSSFVVMAGDAFKVLSNGRISTCEHRVIMNEKKTRYSTGLFSFGNKIMDIPKELINEEHPLRYKPTFDNYDYLRFYEKERINEPSTRIQAYCGIN 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03256 317 SUPERFAMILY Clavaminate synthase-like 9 302 - -
Trre13g03256 317 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 10 295 - -
Trre13g03256 317 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 164 268 IPR005123 -
Trre13g03256 317 Pfam non-haem dioxygenase in morphine synthesis N-terminal 10 86 IPR026992 -
Trre13g03256 317 Gene3D - 8 315 IPR027443 -
Trre13g03256 317 Pfam 2OG-Fe(II) oxygenase superfamily 170 263 IPR044861 -
Trre13g03256 317 FunFam Probable 2-oxoglutarate-dependent dioxygenase AOP1.2 2 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03256 Trre-Chr13 39567742 39572856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03256 127 288 Glycosyltransferase AT5G59530 30.357 1.08e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03256 - - gmx:100775440 491.886