Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03255 ATGGCTCAGTTGCTATCATCTTCTTGCTCCTTGACATTCTCCTCTACAAATAAACCTTGTTTAAAACCTTTTAATCAATGCTCAACATCATTTTCTAACACGGTTGGTTGTGATAACTCTAGAACTCCATTTAGAAAGCTTTTCTTGCGAGAACAGAAACCAATGAAAAGATTCGCAGTTGTAAATGCTGCTACAGTTTCAACGGGCCAGGAAGCTCCGGTTCAAACTAGTTCCGGTGACCCTTTTAAACCGAAGCGAGTAATGGTCATTGGTGGAGATGGATACTGTGGTTGGGCAACTGCCCTCCACCTTTCTAACAAAGGTTACGAGGTTGCCATTGTTGACAACCTTGTTCGTCGTCTTTTTGATCACCAGCTCGGACTAGATTCTCTTACACCAATTTCCTCCATCCAGGATCGCATTCAGTGTTGGAAATCTCTTACTGGAAAAAGTATTGAACTATACATTGGTGATATATGTGAGTTTGAGTTCTTATCTGAAACCTTTAAGTCCTACGAACCTGATGCTGTTGTCCATTTCGGGGAACAGCGATCTGCTCCTTACTCTATGATAGATCGGTCAAGAGCTGTGTATACACAGCAAAACAATGTTATTGGGACACTAAATGTGCTCTTCGCTATAAAAGAGTACAGAGAGGATTGTCATTTAGTTAAGCTTGGGACAATGGGTGAATACGGGACTCCAAATATTGATATCGAGGAAGGTTATATTACCATTACGCACAATGGAAGAACAGACACTTTGCCGTATCCAAAGCAAGCTAGCTCATTCTATCATTTAAGCAAGGTACATGATTCACACAACATAGCCTTCACTTGCAAGGCTTGGGGGATTCGGGCAACTGATCTGAATCAAGGAGTAGTATATGGAGTAAGAACAGATGAGACTGCAATGCATGAAGTGCTGTGTAACAGGTTCGATTATGATGCTATATTTGGAACTGCATTGAATCGGTTTTGTGTTCAGGCTGCTGTTGGTCACCCACTCACTGTATATGGTAAAGGAGGCCAGACTAGGGGCTTCCTTGACATAAGAGATACAGTTCAATGTATTGAGCTTGCCATTGCGAACCCGGCTAACCCTGGAGAGTTCCGAGTTTTCAATCAATTTACCGAGCAATTTCAAGTGAATGAACTAGCTAACCTTGTTACAAAAGCCGGTGAGAAGCTTGGCCTTGACGTGAAAACCATATCAGTGCCTAACCCAAGAGTGGAGTTAGAGGAGCATTATTACAATTGCAAGAACACTAAACTAGTCGATCTTGGACTCAGACCACACTTTCTTTCAGATTCCCTCATTGATTCACTGCTTAACTTTGCGGTTCAGTACAAAGATCGTGTTGACACAAAGCAAATTATGCCTGGTGTTTCTTGGAGAAAGGTTGGAGTCAAAACAAAAACTGTTTCATCATAA 1434 0.4177 MAQLLSSSCSLTFSSTNKPCLKPFNQCSTSFSNTVGCDNSRTPFRKLFLREQKPMKRFAVVNAATVSTGQEAPVQTSSGDPFKPKRVMVIGGDGYCGWATALHLSNKGYEVAIVDNLVRRLFDHQLGLDSLTPISSIQDRIQCWKSLTGKSIELYIGDICEFEFLSETFKSYEPDAVVHFGEQRSAPYSMIDRSRAVYTQQNNVIGTLNVLFAIKEYREDCHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEVLCNRFDYDAIFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVQCIELAIANPANPGEFRVFNQFTEQFQVNELANLVTKAGEKLGLDVKTISVPNPRVELEEHYYNCKNTKLVDLGLRPHFLSDSLIDSLLNFAVQYKDRVDTKQIMPGVSWRKVGVKTKTVSS 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03255 477 CDD SQD1_like_SDR_e 86 466 - -
Trre13g03255 477 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 83 465 - -
Trre13g03255 477 Gene3D - 86 377 - -
Trre13g03255 477 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 85 455 IPR036291 -
Trre13g03255 477 Pfam NAD dependent epimerase/dehydratase family 87 375 IPR001509 -
Trre13g03255 477 Gene3D - 293 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03255 Trre-Chr13 39557244 39559466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03255 1 477 Acyl Lipid Metabolism Gene Families AT4G33030 77.547 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03255 K06118 - gmx:100805019 877.47