Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03253 ATGGATCATATTAGTAATGAAGCTAGTGTAGATCGTTTTCCGATCGGTCCTTCAGACATTCTTGGTAAGACAATTGCTTTTAGGGTTCTATTTTGCAAATCAATGTCACATTTGAGGTATCAAATATTTCAATTGTTGTTAGGATTCTTGTATAAGTTTAAAGGGGTGTTGAAATTGAAACCCTTTTTATCATGGTTTCATCCAAGAAACCCACAAGGGATATTAGCAATGATGACAATAGTTGCTTTATTGTTGAAACGTTACACGAACGTAAAAGTTAGGGCTGAAATGGCATATAGGAGAAAATTTTGGAGAAATATGATGAGAAGTGCTTTGACTTATGATGAATGGGCTCATGGAGCTATGATGCTTGATAAATTAACACCAAAGATGAATGAATCGGATCTTTATGATGTTGAATTGGTGAGGAACAAGCTTCAAGAGCTTCGTCACCGTAGACAAGAGGGATCTCTTAGAGATATTATGTTTTGTATGCGTGCTGATCTTGTTCGAAATTTAGGCAATATGTGTAACCCTGAACTCCATAAGGGTAGGCTTCAAGTCCCTAAATTAATCAAGGAATACCTTGATGAGGTATCAACACAGTTGAGAATGGTTTGCGAATCGGATTCGGAGGAGCTATCGTTGGAAGAAAAGCATGCTTTCATGCATGAAACTAGACATGCTTTTGGGAGAACAGCTTTGCTTTTAAGTGGTGGTGCTTCTCTTGGAGCTTTTCATGTTGGTGTAGTTAAAACATTGGTAAAACATAGACTCTTGCCTAGGATAGTTGCCGGTTCAAGTGTTGGATCCATAATGTGTGCTATTGTTGCCACTAGACCATGGCCAGAACTTCAAAGTTTCTTTGAGGATTCGTTGCATTCATTGCAATTTTTCGATCAAATGGGTGGGATTTTTGCGGTTGTCAAGAGAGTCGCAATGCGCGGAGCTGTTCATGAGATCAGGCAGTTGCAAATGTTGTTGAGGCATTTAACAAACAACCTTACATTTCAAGAAGCTTATGATATGACAGGTAGAGTTCTTGGAATTACGGTTTGCTCCCCAAGGAAGCATGAACCTCCTAGATGTCTTAACTACTTGACGTCACCTCATGTGGTTATATGGAGTGCGGTAACTGCTTCTTGTGCATTCCCTGGCCTTTTTGAAGCTCAAGAATTGATGGCAAAGAATAGAAGCGGAGATATTGTTCCTTACCATCCTCCTTTTAATCTAGGTCCTGAAGAAGGCTCCACACCGTCGCGCCGGTGGAGGGACGGTAGCTTAGAGATTGATTTACCTATGATGCAGTTGAAAGAGCTATTCAATGTCAATCATTTCATTGTCAGTCAGGCCAACCCTCACATTGCACCATTGTTGAGATTGAAAGAGTTCGTAAGAACTTATGGAGGCAATTTTGCTGCCAAGCTTGCTCACCTTGTGGTGATGGAGGTGAAACATAGGTGTAATCAAGTACTGGAACTTGGCTTTCCCTTAGGTGGACTTGCCAAACTGTTTGCTCAAGAATGGGAAGGTGATGTCACTATTGTTATGCCTGCTACCGTTTCTCAGTACTTAAAGATTATACAAAACCCTTCTTTAGGAGAGCTTCAAAAAGCAGCCAACCAAGGGAGAAGATGTAGCTGGGAGAAGCTTTCAGCCATAAAAGCAAATTGTGAAATTGAGCTTGCTCTTGATGAAGCTGTAGCAAAAGTCAATCATCTGAGAAGACTAAAACGGTTTTCTGAGAGAACTGCTGCTTCTGCCTCTCATGGTTTGTCAAGTACTGTCAGATTCAGCGCTTCAAGAAGAATTCCTTCTTGGAATTGCATGGCACGAGAGAACTCGGCAAGTTCTCTTGAAGACCTTACAGATGCTGCTTCGTCGTTGCATCAGGCCATTGGCAGTGACTCTGAAAATGTTGAATCGATTTCTTGGACAAGATCCGGTGGCCCTTTGATGAGAACCGCTTCAGCAAATATGTTTGTCGACTTTCTCCAAAACTTAGAGGTTGTTGATACCGAACTAAATAGAGGTGTGGTGGCTCATGCTAGCCCTCGTGATATTCAGTATCATAGTTTCAGACTCACTGGACCAGAGAGGAACTCAGAATCTGAGCAAAAGGAAATCGACAACAGGGTTGCGAATGGATCTAGCATTGTGTTAACTGAAGGTGATCTTTTGCAGACTGAAAAGATTCATAACGGAATTGTGTTCAATGTTGTCAAGAAAGAAGCCTTAAAACCTTCAGATAGGTGTCTTGATTTTGGAAATTACAACAATCAAGTTGTTGAATGCGACCAAATTGACAGTCCAGGGAAGGAGATGGATACTGCCAGCTCGGATTCTGACTATGAAAATGCCGAATCCACACCTGCTTTGAGCTTGGATCAAAACACTGTTGATAGTAGTTAG 2412 0.4125 MDHISNEASVDRFPIGPSDILGKTIAFRVLFCKSMSHLRYQIFQLLLGFLYKFKGVLKLKPFLSWFHPRNPQGILAMMTIVALLLKRYTNVKVRAEMAYRRKFWRNMMRSALTYDEWAHGAMMLDKLTPKMNESDLYDVELVRNKLQELRHRRQEGSLRDIMFCMRADLVRNLGNMCNPELHKGRLQVPKLIKEYLDEVSTQLRMVCESDSEELSLEEKHAFMHETRHAFGRTALLLSGGASLGAFHVGVVKTLVKHRLLPRIVAGSSVGSIMCAIVATRPWPELQSFFEDSLHSLQFFDQMGGIFAVVKRVAMRGAVHEIRQLQMLLRHLTNNLTFQEAYDMTGRVLGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQELMAKNRSGDIVPYHPPFNLGPEEGSTPSRRWRDGSLEIDLPMMQLKELFNVNHFIVSQANPHIAPLLRLKEFVRTYGGNFAAKLAHLVVMEVKHRCNQVLELGFPLGGLAKLFAQEWEGDVTIVMPATVSQYLKIIQNPSLGELQKAANQGRRCSWEKLSAIKANCEIELALDEAVAKVNHLRRLKRFSERTAASASHGLSSTVRFSASRRIPSWNCMARENSASSLEDLTDAASSLHQAIGSDSENVESISWTRSGGPLMRTASANMFVDFLQNLEVVDTELNRGVVAHASPRDIQYHSFRLTGPERNSESEQKEIDNRVANGSSIVLTEGDLLQTEKIHNGIVFNVVKKEALKPSDRCLDFGNYNNQVVECDQIDSPGKEMDTASSDSDYENAESTPALSLDQNTVDSS 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03253 803 Pfam Patatin-like phospholipase 235 427 IPR002641 GO:0006629
Trre13g03253 803 SUPERFAMILY FabD/lysophospholipase-like 231 574 IPR016035 -
Trre13g03253 803 Gene3D Cytosolic phospholipase A2 catalytic domain 232 320 - -
Trre13g03253 803 MobiDBLite consensus disorder prediction 773 803 - -
Trre13g03253 803 Gene3D Cytosolic phospholipase A2 catalytic domain 321 491 - -
Trre13g03253 803 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 235 438 IPR002641 GO:0006629
Trre13g03253 803 Pfam Domain of unknown function (DUF3336) 97 228 IPR021771 GO:0004806|GO:0006629
Trre13g03253 803 MobiDBLite consensus disorder prediction 766 803 - -
Trre13g03253 803 CDD Pat_SDP1-like 165 572 - -
Trre13g03253 803 PANTHER NEUROPATHY TARGET ESTERASE/SWISS CHEESE D.MELANOGASTER 57 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03253 Trre-Chr13 39532602 39535502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03253 4 779 Acyl Lipid Metabolism Gene Families AT5G04040 73.159 0.0 1184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03253 K14674 - gmx:100816093 1285.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03253 13 39532602 39535502 Trre13g03253 13 39532602 39535502 ECH