Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03249 ATGAAGTTCATCAACCCTAAAAACCTCTCTCCCAAACGCCTCTTCCGTTCCAAAAAGGAAAAATCCTCAGTCTCAAGATCCGACCCACCTTCGTTCGGGTCAGCATCTTCTTCCGATGAATCCACTCACAAAGCTGTTGCTGGAGGCTCACAAACACCTACCAGCGTCCTTCCGGAAGTTTCCAGTGAGTGGTCCGATGTCAACGTTGATGTTCAGTGGGAGCTTGCTCAGGCTTTTCGTTTAATCGACAGAGATAACGACGGTGTCGTTTCGCGTGAAGAACTCGAAGCGGTTCTCACGCGCCTTGGAGCGCGTCCTCCTAGCTCTGAAGAAATCGAGATGATGCTAAGCGAAGTTGATAGCGATGGTAGAGGTTTAATAAGCGTGGAAACTATCATGAACCGGATCGGTTCCGGTTCTGGTTCCGGTTCGGGTTCCGGATCCGGTTCGGGTTCGAATCCGGAGGAAGAACTTAGAGAAGCGTTTGAGGTTTTTGATACGGATCGGGATGGGAGAATCTCGGCGGAAGAGTTGTTGAGGGTTTTTAGAGCGATTGGTGATGAACGGTGCACGTTAGAAGAGTGTAGGCGTATGATAGCAGGTGTTGATAAAAACAGGGATGGGTTCGTGTGTTTTGAGGAATTTTCTGTTATGATGGAGTTGCAACGGTGA 672 0.4911 MKFINPKNLSPKRLFRSKKEKSSVSRSDPPSFGSASSSDESTHKAVAGGSQTPTSVLPEVSSEWSDVNVDVQWELAQAFRLIDRDNDGVVSREELEAVLTRLGARPPSSEEIEMMLSEVDSDGRGLISVETIMNRIGSGSGSGSGSGSGSGSNPEEELREAFEVFDTDRDGRISAEELLRVFRAIGDERCTLEECRRMIAGVDKNRDGFVCFEEFSVMMELQR 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03249 223 Gene3D - 149 223 - -
Trre13g03249 223 ProSiteProfiles EF-hand calcium-binding domain profile. 190 223 IPR002048 GO:0005509
Trre13g03249 223 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 157 220 - -
Trre13g03249 223 MobiDBLite consensus disorder prediction 135 157 - -
Trre13g03249 223 ProSitePatterns EF-hand calcium-binding domain. 203 215 IPR018247 -
Trre13g03249 223 CDD EFh 157 219 IPR002048 GO:0005509
Trre13g03249 223 CDD EFh 74 130 IPR002048 GO:0005509
Trre13g03249 223 ProSitePatterns EF-hand calcium-binding domain. 166 178 IPR018247 -
Trre13g03249 223 FunFam calmodulin-like protein 3 152 223 - -
Trre13g03249 223 ProSiteProfiles EF-hand calcium-binding domain profile. 153 188 IPR002048 GO:0005509
Trre13g03249 223 FunFam Calmodulin, putative 69 140 - -
Trre13g03249 223 Gene3D - 70 137 - -
Trre13g03249 223 ProSiteProfiles EF-hand calcium-binding domain profile. 74 105 IPR002048 GO:0005509
Trre13g03249 223 MobiDBLite consensus disorder prediction 1 63 - -
Trre13g03249 223 SUPERFAMILY EF-hand 61 219 IPR011992 -
Trre13g03249 223 MobiDBLite consensus disorder prediction 135 153 - -
Trre13g03249 223 SMART efh_1 157 185 IPR002048 GO:0005509
Trre13g03249 223 SMART efh_1 74 102 IPR002048 GO:0005509
Trre13g03249 223 SMART efh_1 194 222 IPR002048 GO:0005509
Trre13g03249 223 SMART efh_1 111 139 IPR002048 GO:0005509
Trre13g03249 223 MobiDBLite consensus disorder prediction 26 63 - -
Trre13g03249 223 ProSitePatterns EF-hand calcium-binding domain. 83 95 IPR018247 -
Trre13g03249 223 Pfam EF-hand domain pair 75 130 IPR002048 GO:0005509
Trre13g03249 223 Pfam EF-hand domain pair 155 219 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03249 Trre-Chr13 39503023 39503694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03249 8 223 EF-hand Containing Proteins AT3G10190 50.224 1.77e-62 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03249 K13448 - gmx:100815559 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03249 13 39503023 39503694 Trre13g03249 13 39503023 39503694 ECH