Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03239 ATGGCCGTTATGATGAGTCGTTTCCGTGCACTAACTTCCAAATCCAATTCACTCACGTCACTCAACAAATTATGCCGCCGTTCGCCGTCGTACTCTTCCTCCGCAGCGGCGGTGACTGAAGAACATGACACCAGCAGTACTTTTTTGAAAGATTATGCTGATTATAGAAGATCTCTTTACGGTCAGATCACTCATAAAGCTCTTCTTGTTGATGCTGTTGGTACTCTTGTTCTTCCTTCTCAACCTATGGCTCAGATATATAAGAATATTGGGGAGAAATATGGTGTGGATTATTCAGAGGAAGAGATTTTGCATAGATACAGAAGAGCTTATAGTCAGCCTTGGGGTAAATCTCGTCTCAGATATGTAAATGATGGTAGGCCTTTCTGGCAATACATAGTGAGCCAATCTACTGGCTGTTCAGATGCTCAATACTTTGAAGAACTTTATAACTACTATACAACAGACAAGGCATGGCACCTATGTGACCCTAATGCAGGAGAAGTGTTCAAAGCTCTTAGAAAATCAGGTGTAAAATTGGCTGTTGTGTCAAATTTTGACACTCGGTTAAGACCTCTCCTGCGGGCATTAAATTGTGATGATTGGTTTGATGCTGTAGCGGTATCAGCTGAGGTTGAAGCAGAGAAACCAAATCCAACTATATTTCTTAAAGCGTGTGAACTATTGGATGTAAAACCTGAGGATGCTGTTCATGTTGGCGATGATCGACGGAATGATATATGGGGTGCTAGAGATGCTGGCTGTGATGCTTGGCTTTGGGGAAGCGATGTTCACTCTTTTAAGGAGGTAGCACAGAGGATTGGGGTTCAGGTCTGA 837 0.4277 MAVMMSRFRALTSKSNSLTSLNKLCRRSPSYSSSAAAVTEEHDTSSTFLKDYADYRRSLYGQITHKALLVDAVGTLVLPSQPMAQIYKNIGEKYGVDYSEEEILHRYRRAYSQPWGKSRLRYVNDGRPFWQYIVSQSTGCSDAQYFEELYNYYTTDKAWHLCDPNAGEVFKALRKSGVKLAVVSNFDTRLRPLLRALNCDDWFDAVAVSAEVEAEKPNPTIFLKACELLDVKPEDAVHVGDDRRNDIWGARDAGCDAWLWGSDVHSFKEVAQRIGVQV 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03239 278 Gene3D - 81 154 IPR044924 -
Trre13g03239 278 SFLD Haloacid Dehalogenase 66 260 - -
Trre13g03239 278 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 221 241 IPR006439 -
Trre13g03239 278 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 173 186 IPR006439 -
Trre13g03239 278 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 203 219 IPR006439 -
Trre13g03239 278 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 65 76 IPR006439 -
Trre13g03239 278 NCBIfam HAD-IA family hydrolase 174 254 IPR006439 -
Trre13g03239 278 Gene3D - 70 262 IPR023214 -
Trre13g03239 278 Pfam Haloacid dehalogenase-like hydrolase 74 257 IPR041492 -
Trre13g03239 278 NCBIfam HAD hydrolase, REG-2-like, family IA 66 259 IPR011949 -
Trre13g03239 278 NCBIfam HAD-IA family hydrolase 156 256 IPR006439 -
Trre13g03239 278 PANTHER - 16 277 - -
Trre13g03239 278 CDD HAD_dREG-2_like 166 277 - -
Trre13g03239 278 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 66 260 - -
Trre13g03239 278 SUPERFAMILY HAD-like 66 269 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03239 Trre-Chr13 39311728 39315660 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03239 - - gmx:100789672 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03239 13 39311728 39315660 Trre13g03239 13 39311728 39315660 ECH