LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g03221	ATGGCAGAGAATGGAACAACACACACCGAACCTACACAAACCACAACTCCAATGGAGATTGAAAATGGAAACGGAGATTCAACACCACAAGAACCACCACAACCACCAAAATGTTTAATCACAAAATTAGACAATGGAACCATAGAGAGTCATCGTTACTACTTATCTCGCAAAACAACACTCGAGATGCTCAAAGATAGAGGTTACTCTATCCCTTCTGATGAAATCCAACTCTCTCTCGATGAGTTTCGTCAAATTCACGGTCAATCTCCTGATGTTGATCGTCTCCGTTTCACTGCTACTCATACCACTAATCCATCCAAAAGGATTTTAGTGATTTTTAGTGGACCTGGTATTGTGAAAGTGAATGTGATTAGGAACATTGCTGGACAAATTGTGAACAGAGATACTTTGACTGGTCTTATTTTGATTGTTCAAAATCAAATTACTAGTCAAGCTTTGAAAGCTATTAATCTTCTTAATTTCAAGGTTGAAATTTTTCAGATTACAGACTTGCTTGTTAATGTTACAAAGCATGTATTGAAGCCAAAGCATCAGGTGCTGACTGATAAGCAGAAAAAAAATCTCCTGAAGAAGTACGATATACAAGAAAAACAGCTTCCTCGAATGCTACAGAGTGATGCAATTGCTCGATATTATGGACTTCAGAGGGGGCAAGTAGTCAAAGTTACCTACACCGGTGAAATCACCCAGATGCATGTCACATATCGATGTGTTTGGTGA	744	0.3858	MAENGTTHTEPTQTTTPMEIENGNGDSTPQEPPQPPKCLITKLDNGTIESHRYYLSRKTTLEMLKDRGYSIPSDEIQLSLDEFRQIHGQSPDVDRLRFTATHTTNPSKRILVIFSGPGIVKVNVIRNIAGQIVNRDTLTGLILIVQNQITSQALKAINLLNFKVEIFQITDLLVNVTKHVLKPKHQVLTDKQKKNLLKKYDIQEKQLPRMLQSDAIARYYGLQRGQVVKVTYTGEITQMHVTYRCVW	247

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g03221	247	Gene3D	-	172	247	IPR035913	-
	Trre13g03221	247	MobiDBLite	consensus disorder prediction	1	36	-	-
	Trre13g03221	247	FunFam	DNA-directed RNA polymerases I, II, and III subunit RPABC1	172	247	-	-
	Trre13g03221	247	SUPERFAMILY	RPB5-like RNA polymerase subunit	172	247	IPR035913	-
	Trre13g03221	247	SUPERFAMILY	Eukaryotic RPB5 N-terminal domain	48	175	IPR036710	GO:0003677\|GO:0003899\|GO:0006351
	Trre13g03221	247	Pfam	RNA polymerase Rpb5, C-terminal domain	174	246	IPR000783	GO:0003677\|GO:0003899\|GO:0006351
	Trre13g03221	247	PANTHER	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	48	247	IPR014381	GO:0003899
	Trre13g03221	247	Gene3D	-	45	171	IPR036710	GO:0003677\|GO:0003899\|GO:0006351
	Trre13g03221	247	MobiDBLite	consensus disorder prediction	1	28	-	-
	Trre13g03221	247	PIRSF	RPB5	43	247	IPR014381	GO:0003899
	Trre13g03221	247	Pfam	RNA polymerase Rpb5, N-terminal domain	49	131	IPR005571	GO:0003677\|GO:0003899\|GO:0006351

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g03221	Trre-Chr13	39046687	39049753	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g03221	K03013		-	gmx:100306033	355.91

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre13g03221	13	39046687	39049753	Trre13g03221	13	39046687	39049753	ECH