Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03220 ATGGACGCCAAGTTCGGAAGCTTATTTGAAACCATCGGAAACTTCTTCACCGGCGGCGATCAGATCCCTTGGTGCGATCATGATGTTATCTCTGGTTGTGAAAGAGAAGTTGCAGAGGCTTCTAATGGCGACTCCGATGAGCGGAAGAATGAAAGCATAATGAGGTTGTCATGGGCACTTGTTCATTCAAGGAAACAAGAAGATGTTCAGCGTGGGATTGCCATGCTTGAAATTTCTCTGGGCAATGATAAAAGTCCTTTACATCAAAGAGAGAAGCTTTATCTTCTTGCTGTTGGGTACTACAGGGCTAATGATTATACTAGGAGTCGACAGCTTTTGGAGCAATGTTTGGAGATTGCACCTGATTGGAGGCAGGCATTGTCCCTCAAGAAAACAGTCGAAGATGGAATTGCGAAGGATGGTGTAATAGGAATTGGCATCAGTGCAACTGCTGCAGGGATTTTAGTTGGTCTCGTTGCTGCAGCATTGTCCCGAAGGGGTTGA 504 0.4563 MDAKFGSLFETIGNFFTGGDQIPWCDHDVISGCEREVAEASNGDSDERKNESIMRLSWALVHSRKQEDVQRGIAMLEISLGNDKSPLHQREKLYLLAVGYYRANDYTRSRQLLEQCLEIAPDWRQALSLKKTVEDGIAKDGVIGIGISATAAGILVGLVAAALSRRG 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03220 167 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11 6 163 IPR016543 GO:0000266
Trre13g03220 167 Gene3D Tetratricopeptide repeat domain 24 165 IPR011990 GO:0005515
Trre13g03220 167 FunFam Mitochondrial fission 1 protein 24 167 - -
Trre13g03220 167 SUPERFAMILY TPR-like 10 165 IPR011990 GO:0005515
Trre13g03220 167 Pfam Fis1 N-terminal tetratricopeptide repeat 51 78 IPR028058 -
Trre13g03220 167 Pfam Fis1 C-terminal tetratricopeptide repeat 90 142 IPR028061 -
Trre13g03220 167 CDD Fis1 23 141 IPR033745 -
Trre13g03220 167 PIRSF TPR_repeat_11_Fis1 4 166 IPR016543 GO:0000266
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03220 Trre-Chr13 39037147 39041581 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03220 K17969 - gmx:100306722 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03220 13 39037147 39041581 Trre13g03220 13 39037147 39041581 ECH