Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03213 ATGTGGTGTCTAGTGTGGCCACACGAGCTCTACCATTACCCTTACGGTTGTGTCTTCTATATGCAAACAAACTCATTGCAATGCTTCGTTTTCTCCTCTTTCTCTGCTCTCAACGTTGTGGGAGGTGGTCCTGCAGGGCTTGCAGTAGCACAGCAAGTTTCTGAAGCAGGGCTTTCGGTTTGCGCCATTGATCCGAACCCTAGATTGATTTGGCCTAACAATTATGGTGTTTGGGTGGATGAATTTGAAGCAATGGATTTACTTGATTGCCTTGATAAAACTTGGTCTGGTGCCGTTGTTTACATCGACGATAAAACAAAAAAGGATCTTGATAGACCTTATGGTAGGGTTAATAGGAAGCTTTTGAAGTCAAAGATGCTACAAAAATGCATATCAAATGGTGTGAAGTTTCATCAAGCTAAAGTTAATAAGGTTATTCATGAGGAATCCAAGTCGTTGTTGATTTGTAACGACGGTGTTACGGTTCAGGCTACTGTGGTTCTTGATGCTACTGGCTTTTCAAAATGTCTAGTCCAGTATGATAAACCGTATAATCCGGGTTACCAAGTTGCGTATGGGATTTTGGCCGAGGTTGATGAACATCCGTTTGATGTTGATAAAATGCTTTTTATGGACTGGAGAGATTCGCATCTAGACAATGATATGAAGCTCAAGGAGAGAAATAGTAAAATACCTACTTTTCTATATGCAATGCCCTTTTCGTCCACAAAGATATTTCTCGAAGAAACCTCGCTTGTTGCTCGCCCTGGGTTACGGATGGATGATATACAGGATAGAATGGTTGCTAGATTGAAACACTTGGGTATCAATGTTAAAAGCATCGAAGAAGATGAACAGTGTGTCATTCCCATGGGTGGCCCTCTCCCAGTTCTCCCTCAGAGAGTTGTTGGAATCGGCGGTACGGCCGGGATGGTGCATCCTTCTACCGGGTATATGGTAGCAAGGACCCTAGCTGCAGCTCCTATTGTTGCTAATGCTATTGTTCAGTATCTTGGTTCTGATAGAGGCCTTTTAGGAGACGAAGTATCTGCACAAGTATGGAAAGACTTATGGCCGATCGAAAGAAGGCGACAAAGAGAGTTCTTCTGTTTTGGTATGGACGTCTTACTCAAGCTTGATTTACCTGGCACAAGAAGATTTTTCAATGCGTTTTTTAATCTGGAACCTTATTATTGGCATGGATTCTTATCATCAAGACTGTATCTTCCTGAGCTGTTTACTTTTGGACTATCTCTATTTTCTTATGCTTCAAATACATCTAGGATAGAGATTATGGCAAAGGGAACTCTTCCTTTGGTAAATATGGTCAACAACTTGATAAAAGATAAAGAATAA 1356 0.4137 MWCLVWPHELYHYPYGCVFYMQTNSLQCFVFSSFSALNVVGGGPAGLAVAQQVSEAGLSVCAIDPNPRLIWPNNYGVWVDEFEAMDLLDCLDKTWSGAVVYIDDKTKKDLDRPYGRVNRKLLKSKMLQKCISNGVKFHQAKVNKVIHEESKSLLICNDGVTVQATVVLDATGFSKCLVQYDKPYNPGYQVAYGILAEVDEHPFDVDKMLFMDWRDSHLDNDMKLKERNSKIPTFLYAMPFSSTKIFLEETSLVARPGLRMDDIQDRMVARLKHLGINVKSIEEDEQCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVQYLGSDRGLLGDEVSAQVWKDLWPIERRRQREFFCFGMDVLLKLDLPGTRRFFNAFFNLEPYYWHGFLSSRLYLPELFTFGLSLFSYASNTSRIEIMAKGTLPLVNMVNNLIKDKE 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03213 451 SUPERFAMILY FAD/NAD(P)-binding domain 39 417 IPR036188 -
Trre13g03213 451 PANTHER - 37 446 - -
Trre13g03213 451 Pfam Lycopene cyclase protein 39 428 - -
Trre13g03213 451 Gene3D - 38 379 IPR036188 -
Trre13g03213 451 FunFam lycopene epsilon cyclase, chloroplastic 33 370 - -
Trre13g03213 451 NCBIfam lycopene cyclase family protein 39 431 IPR010108 GO:0016117|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03213 Trre-Chr13 38990531 38992292 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03213 K06443 - gmx:100810895 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03213 13 38990531 38992292 Trre13g03213 13 38990531 38992292 ECH