Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03179 ATGGCGCTACACACGGTGTCATCGGTTTCTCAAGTACTTCGTCTCTCCGATACATTTACTTCCATCGGTAACCGTCACTTGCTCGTCGATTTCGCTCCTTTCCGTCGTAAATCATCGAAACGGTATAATCGTAGATTCACTCCGTTTATTTCTCCGGTTAATCTCCGTCGTAGTTCCGTTAAAGCTGTTCTTCAACTTGATAATCACCTCGATCCTGCTCCTCCTCCTTCTTCTTCAACTTCCGATTTAAAACCTCAGGTTGCAAACTTGGAGGATATACTATCAGAAAGAGGGGCCTGTGGTGTTGGATTCATTGCCAATTTGGAAAATAAGGGATCATACGAGATTGTCAAGGATGCTTTAAATGCTTTAAGCTGTATGGAACATCGTGGGGGATGTGGTGCAGATAATGACTCTGGTGATGGTTCGGGAGTGATGACTGCAATTCCTTGGGATCTATTTGACAACTGGGCAAACAAGCAAGGGATTGCTTCCTTTGATAAGTTGCACACTGGCGTTGGAATGGTTTTCCTACCCAAAGATGTAGAACTTACGAATAAGGCCAAGAATGTTATTGTAAATACTTTTCAGCAAGAAGGTCTTGAGGTGCTTGGGTGGAGGCCAGTCCCTGTAAATACTTCTGTTGTAGGTTATTATGCAAAGGAGGCCATGCCCAATATACAGCAGGTATTTGTCAAGATTGCGAAGGAAGAAAATATTGAAGACATTGAACGAGAACTGTACATTTGTCGGAAACTGATTGAAAAAGAAGTAAGCTCGGAAAGTTGGGGAAATGAGCTTTATTTTTGTTCTTTATCCAATCGAACAATAGTTTACAAGGGGATGCTTCGCTCAGAAGTTTTGGGGTTATTTTACTCTGACCTTCAAAATGATCTTTATAAATCATCCTTTGCCATTTATCATCGAAGGTATAGCACAAATACTAGTCCTAGATGGCCTCTTGCACAGCCAATGAGACTTCTTGGTCATAATGGAGAGATCAACACCATACAGGGAAACTTGAATTGGATGCAATCACGAGAGCCTTCATTGAAGTCACCTGTATGGCGAGGCCGTGAAAATGAAATTCGTCCATTTGGAAATCCAAAAGCATCAGACTCGGCAAATCTTGACAGTGCTGCAGAATTATTAATAAGAAGTGGTCGAAGCCCTGAGGAGTCCATGATGATTCTTGTTCCAGAGGCTTACAAAAATCATCCAACACTGACAATCAAATACCCTGAGGCGATTGACTTCTATGACTACTACAAGGGCCAGATGGAAGCTTGGGATGGACCCGCCTTGCTTTTATTCAGTGATGGAAAAACTGTTGGTGCATGCCTTGATCGTAATGGACTTCGACCTGCTAGGTATTGGCGAACATCAGACAACATGGTCTATGTTTCCTCTGAGGTTGGTGTTGTACCAGTGGACGATTCAAAGGTTATCTCGAAAGGTCGATTAGGTCCAGGCATGATGATAACGGTTGATCTACTTGGTGGCCAGGTCTATGAGAATATGGAGGTTAAAAAACGAGTAGCCTTGTCAAACCCATATGGGAACTGGATCAAGGAAAACCAGCGGTCTTTGAAGTCTGCGAATTTCCTTTCATCCTCTGTGATGGAGAATGATGCTGTATTAAGACACCAACAGGCATTTGGGTACTCAAGTGAAGATGTCCAGATGGTGATTGAGAGTATGGCTTCTCAAGGAAAGGAACCTACATTTTGTATGGGAGATGATATTCCATTGGCAGCGTTATCTCAGAAACCTCACATGCTTTTTGATTACTTTAAGCAACGGTTTGCACAGGTTACGAATCCGGCAATTGATCCGCTTCGAGAAGGGCTAGTTATGTCTCTTGAAGTAAATATAGGGAAGAGACGGAATATATTGGAAATAGGACCAGAGAATGCTTCACAGGTTATATTATCTAGTCCGGTATTGAATGAAGGGGAACTTGAATCATTGCTAAAAGACTCCCAGTTAAAACCACAAGTGTTGCACACATTTTTTGATATAACTAAGGGGATTGATGGTTCCTTGGAGAAAGCATTAAATAAGCTTTGCGACGCTGCAGATGAAGCTGTTAGAAATGGTTCCCAGCTGCTTATTCTTTCAGACCGTTCAGAAGCACTGGAACCAACTCATCCTGCAATTCCAATACTTCTTGCTGTTGGTACTGTTCATCAGCATCTAATCCAGAATGGCCTTCGGATGTCAGCTTCAATCATAGCGGATACTTCTCAGTGCTTTAGCACTCATCAATTTGCCTGTTTAATAGGATATGGTGCAAGTGCTGTGTGTCCATACTTGGCACTGGAGACATGTCGTCAATGGCGTTTGAGTAATAAAACGGTAAATCTTATGAAGAATGGAAAGATGCCTACTGTATCAATTGAACAGGCGCAGAAAAACTACTGCAAGGCTGTAAAAGCAGGTCTTCTTAAAATTCTTTCCAAAATGGGCATCTCATTGCTTTCAAGTTACTGTGGTGCACAGATATTTGAAATTTATGGATTGGGAAAGGAAGTTGTGGATGTTGCGTTCACTGGAAGTGTATCGAAAATTGGCGGATTAACTTTTGATGAGCTAGCTAGAGAGACTTTGTCTTTCTGGGTGAAGGCATTCTCTGAAGATACAGCTAAAAGATTGGAAAATTTTGGATTTATAGTGTTCAGACCAGGAGGCGAGTATCATGCAAATAATCCAGAGATGTCAAAGTTGCTCCACAAAGCTGTTCGTCAGAAAAGCCAAAATGCCTTTTCCGTTTATCAACAATATTTGGCTAATCGACCTGTGAATGTTCTCCGTGATCTTCTTGAGTTCAAAAGTGATCGTGCCCCCATTCCTGTGGGGAAGGTTGAACCTGCTTTATCTATTGTGAAACGGTTTTGCACTGGGGGGATGTCTCTTGGAGCTATATCTAGGGAAACCCATGAAGCAATTGCAATTGCGATGAACAGAATAGGTGGAAAATCAAATTCAGGGGAAGGTGGTGAGGATCCTATTCGCTGGAAACCACTTACTGATGTTGTTGATGGTTACTCTCCAACGCTTCCACATCTTAAAGGTCTTCAAAATGGGGATACTGCTACTAGTGCAATCAAACAGGTCGCTTCAGGAAGGTTTGGTGTCACTCCAACATTCTTGGCAAATGCTGATCAATTAGAAATCAAAATTGCACAAGGTGCAAAGCCTGGTGAAGGTGGACAATTGCCTGGGAAAAAAGTTAGCATGTATATTGCAAGGCTGAGAAATTCTAAACCAGGGGTTCCTCTTATATCTCCACCTCCTCATCATGACATTTACTCTATTGAAGATCTTGCTCAATTGATCTTTGATCTTCACCAGGTGAACCCTAAGGCCAAGGTATCTGTAAAACTGGTGGCTGAAGCTGGAATTGGCACTGTTGCATCTGGGGTTGCAAAGGGCAATGCTGACATTATACAGATTTCAGGACATGATGGGGGAACAGGAGCAAGCCCTATAAGTTCCATCAAACATGCAGGTGGTCCTTGGGAACTTGGACTTACGGAATCTCACCAGACACTCGTTGAGAATGGACTCAGAGAAAGGGTTATTCTCAGAGTTGATGGTGGATTTAGAAGTGGAGTTGATGTCATGATGGCAGCAATAATGGGTGCTGATGAATATGGGTTTGGTTCAGTGGCAATGATTGCAACCGGATGTGTTATGGCTCGCATTTGCCACACCAATAACTGTCCAGTTGGTGTTGCCAGTCAGAGGGAAGAGTTGCGCGCACGGTTTCCTGGTGTCCCCGGTGATCTTGTAAACCTCTTTTTGTATGTAGCTGAAGAGGTAAGAGGCACTTTGGCACAGCTGGGGTATGAGAAGTTAGATGATATAATTGGCCGAACAGAATTGTTGAGACCAAGAGACATATCTCTTGTGAAAACACAGCATCTAGATCTGAGTTATATCCTCTCTAATGTTGGGTTACCTAAATTGAGCAGTACAGAAATCAGGAATCAGGAGCCACATACCAATGGTCCTGTTCTGGATGATGTTTTGCTAGCAGACCCAGAGATTGCAGATGCCATTGAAAATGAAAAAGCTGTTAGTAAGACCATAAAGATATACAATGTTGATCGTTCTGCCTGTGGGCGTATTGCTGGTGTTATTGCAAAGAAATATGGTGACACTGGTTTTGCTGGACAGTTGAATATAACATTTACAGGAAGTGCTGGGCAGTCATTTGGGTGCTTTTTGACACCAGGAATGAATATTCGCCTTGTAGGAGAAGCTAATGATTATGTTGGGAAGGGCATTGCTGGTGGTGAATTGGTTGTCACTCCAGTTGACAAGACAGGATTTATACCTGAGGATGCAGCTATTGTGGGGAACACGTGCTTGTATGGGGCAACAGGTGGGCAGGTCTTTGTTAGAGGGAAAGCTGGGGAAAGGTTTGCTGTCAGAAACTCACTTGCTGAAGCTGTAGTTGAAGGCACAGGAGATCATTGTTTGGAGTACATGACTGGTGGCTGTGTGGTTATCCTGGGAAAAGTGGGCAGGAATGTAGCTGCTGGAATGACAGGAGGGTTGGCTTACATTTTAGATGAGGATGATACTCTCATTCCCAAGATAAACAGAGAAATTGTTAAAATTCAACGAGTAACAGCGCCTGTAGGGCAGATTCAACTGAAGAAACTAATTGAAGCCCATGTTGAAAAAACGGGTAGCAACAAAGGTGATGCAATTCTGAAGGACTGGGACAAGTATTTATCACTATTTTGGCAGTTGGTTCCACCTAGCGAAGAAGATACCCCCGAAGCTAATGCCAAATATGACATAACTGCAACGGAGCAAGTCACTTTTCAGTCTGCTTAG 4851 0.429 MALHTVSSVSQVLRLSDTFTSIGNRHLLVDFAPFRRKSSKRYNRRFTPFISPVNLRRSSVKAVLQLDNHLDPAPPPSSSTSDLKPQVANLEDILSERGACGVGFIANLENKGSYEIVKDALNALSCMEHRGGCGADNDSGDGSGVMTAIPWDLFDNWANKQGIASFDKLHTGVGMVFLPKDVELTNKAKNVIVNTFQQEGLEVLGWRPVPVNTSVVGYYAKEAMPNIQQVFVKIAKEENIEDIERELYICRKLIEKEVSSESWGNELYFCSLSNRTIVYKGMLRSEVLGLFYSDLQNDLYKSSFAIYHRRYSTNTSPRWPLAQPMRLLGHNGEINTIQGNLNWMQSREPSLKSPVWRGRENEIRPFGNPKASDSANLDSAAELLIRSGRSPEESMMILVPEAYKNHPTLTIKYPEAIDFYDYYKGQMEAWDGPALLLFSDGKTVGACLDRNGLRPARYWRTSDNMVYVSSEVGVVPVDDSKVISKGRLGPGMMITVDLLGGQVYENMEVKKRVALSNPYGNWIKENQRSLKSANFLSSSVMENDAVLRHQQAFGYSSEDVQMVIESMASQGKEPTFCMGDDIPLAALSQKPHMLFDYFKQRFAQVTNPAIDPLREGLVMSLEVNIGKRRNILEIGPENASQVILSSPVLNEGELESLLKDSQLKPQVLHTFFDITKGIDGSLEKALNKLCDAADEAVRNGSQLLILSDRSEALEPTHPAIPILLAVGTVHQHLIQNGLRMSASIIADTSQCFSTHQFACLIGYGASAVCPYLALETCRQWRLSNKTVNLMKNGKMPTVSIEQAQKNYCKAVKAGLLKILSKMGISLLSSYCGAQIFEIYGLGKEVVDVAFTGSVSKIGGLTFDELARETLSFWVKAFSEDTAKRLENFGFIVFRPGGEYHANNPEMSKLLHKAVRQKSQNAFSVYQQYLANRPVNVLRDLLEFKSDRAPIPVGKVEPALSIVKRFCTGGMSLGAISRETHEAIAIAMNRIGGKSNSGEGGEDPIRWKPLTDVVDGYSPTLPHLKGLQNGDTATSAIKQVASGRFGVTPTFLANADQLEIKIAQGAKPGEGGQLPGKKVSMYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIFDLHQVNPKAKVSVKLVAEAGIGTVASGVAKGNADIIQISGHDGGTGASPISSIKHAGGPWELGLTESHQTLVENGLRERVILRVDGGFRSGVDVMMAAIMGADEYGFGSVAMIATGCVMARICHTNNCPVGVASQREELRARFPGVPGDLVNLFLYVAEEVRGTLAQLGYEKLDDIIGRTELLRPRDISLVKTQHLDLSYILSNVGLPKLSSTEIRNQEPHTNGPVLDDVLLADPEIADAIENEKAVSKTIKIYNVDRSACGRIAGVIAKKYGDTGFAGQLNITFTGSAGQSFGCFLTPGMNIRLVGEANDYVGKGIAGGELVVTPVDKTGFIPEDAAIVGNTCLYGATGGQVFVRGKAGERFAVRNSLAEAVVEGTGDHCLEYMTGGCVVILGKVGRNVAAGMTGGLAYILDEDDTLIPKINREIVKIQRVTAPVGQIQLKKLIEAHVEKTGSNKGDAILKDWDKYLSLFWQLVPPSEEDTPEANAKYDITATEQVTFQSA 1616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03179 1616 CDD GltS 100 517 - -
Trre13g03179 1616 CDD GltS_FMN 903 1298 IPR002932 GO:0006537|GO:0015930|GO:0016638
Trre13g03179 1616 Pfam GXGXG motif 1366 1548 IPR002489 GO:0016491
Trre13g03179 1616 SUPERFAMILY FMN-linked oxidoreductases 544 1321 - -
Trre13g03179 1616 FunFam Ferredoxin-dependent glutamate synthase, chloroplastic 890 1300 - -
Trre13g03179 1616 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 100 526 IPR029055 -
Trre13g03179 1616 SUPERFAMILY Alpha subunit of glutamate synthase, C-terminal domain 1334 1597 IPR036485 GO:0016491
Trre13g03179 1616 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 100 636 IPR029055 -
Trre13g03179 1616 Pfam Glutamine amidotransferases class-II 100 522 IPR017932 -
Trre13g03179 1616 Pfam Glutamate synthase central domain 549 841 IPR006982 GO:0006807|GO:0015930
Trre13g03179 1616 FunFam Ferredoxin-dependent glutamate synthase, chloroplastic 1322 1597 - -
Trre13g03179 1616 CDD gltB_C 1341 1591 IPR002489 GO:0016491
Trre13g03179 1616 FunFam Ferredoxin-dependent glutamate synthase, chloroplastic 526 889 - -
Trre13g03179 1616 Gene3D Aldolase class I 574 1300 IPR013785 -
Trre13g03179 1616 Gene3D Aldolase class I 526 892 IPR013785 -
Trre13g03179 1616 Gene3D - 1322 1597 IPR036485 GO:0016491
Trre13g03179 1616 PANTHER FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE 102 1598 - -
Trre13g03179 1616 Pfam Conserved region in glutamate synthase 900 1284 IPR002932 GO:0006537|GO:0015930|GO:0016638
Trre13g03179 1616 FunFam Glutamate synthase, large subunit 100 533 - -
Trre13g03179 1616 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 100 499 IPR017932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03179 Trre-Chr13 38344498 38371982 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03179 K00284 - gmx:548016 2964.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03179 13 38344498 38371982 Trre13g03179 13 38344498 38371982 ECH