Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03178 ATGATTGGTAAAGATGGAGGTGTTTTCAAGGCATGGGAAGCCACGGTGAGAAGAACGCACGCAGTTGCTAAGAAGCGCGCCAATAGTATATTTGGAATCGGAACATTATCGATATCAAGTACAGATGATGAAGAAAACAACAGCATTGATGATAACGAAGATCATGGAAACGATACATTTGAACTATATAATGAAGAGAAGGTTCTTCCCAATGGAGACTACTATACCGGACAATGGGCGGAAAATTTTCCACACGGAGAAGGGAAATATCTATGGACAGACGGGTGTATGTATGTCGGAGAATGGTTCAAAGGAAAAACAAAGGGAAAAGGAAGATTCAGTTGGCCTTCAGGTGCAACATATGAAGGTGAATTCAAGAGTGGTTTTATGGATGGTGTAGGAACATACACTGGTTGTAATGGAGAGACATATAAGGGACAATGGGTGATGAATTTGAAACATGGTCATGGATATAAGAGTTATGTGAATGGTGATTGGTATGAAGGTGATTGGAGAAGAGGGGTGCAAGATGGAAAAGGGAGGTATGAATGGAGAGATATGAGTCATTATATTGGTGAATGGAAAAATGGGACAATTTGGGGTAAAGGGTCATTTTATTGGCCTAATGGGAATAGTTTTGAAGGGTTTTGGGAAGATGGTTTACCAAAAGGAGATGGAACATATAGATGGCAAGATGGAAGTTGTTACATTGGGATTTTTAGTAAAGATGGTATGAACAAAGATGAAGATGGAACACTTTATCCAATGGATCCATCTGATGAGAGATGGAATGATTGGGATCCTCTAGAATTGTATAATGAATTGAATGGATATTCAGTTTGTCCTAGTGACAAAGTTTTGGTTTTGCCATCACAAAAAAGACTTGCTGTTTGGAGGTCTACAAAGGGAGGGGAAAGTGTTAGACCTAGGAGAATGTCGGTCGACGGAAGAGTGAGTGTTGGAGGAGAGAAGCCAACTGATAGAATGAATTTGTGGGATGGTGGTGGGAGTAGCCATGGAGGAGGAAGCCATCATGGAGGAGGAGGAGATGGTGATGCTAGCACCGGTGGTAATAGAACTCCTCCTCCATTAGGTAGTGACTATGACGATGAATCAATTGGTTCACGTATCGATGATGCTAACGATGCTTTGAATCAACTTCAACCTTTGAAAGCACCTAAGAAATCAAAGAGGCAGGGTGAGACTATATGCAAAGGGCACAAAAATTTTGAGCTCATGCTTAATTTGCAGCTGGGAATTAGGCACTCAGTTGCAAGACCTGCTCCCACAGCATCACTTGATCTTAAGCCATCAGCTTTTGATCCAAAGGAGAAAGTGTGGACAAAATTTCCACCTGAAGGTTCTAAATATACTCCACCACATCCATCATGTGACTTTAAATGGAAGGACTATTGCCCAGTAGTTTTTAGGACTCTTAGGAAGCTATTCAATGTGGATCCAGCTGATTACATGCTATCCATATGTGGAAATGACGCTCTTCGCGAACTTTCCTCACCTGGAAAAAGTGGAAGTTTCTTTTACTTAACCAATGACGACCGTTACATGATTAAGACAATGAAAAAAGCTGAAGTAAAAGTCCTTATAAAAATGCTTCCAGCTTATTACAATCATTTTAAAGAGAACCAAAATACTCTATTAACAAAATATTATGGCCTGCATTGTGTAAAATTAAATGGACCTATCCAAAAAAAGGTTAGATTTATCATAATGGGAAACCTCTTTTGTTCCGAGTATATCACACATAGACGCTATGATTTGAAGGGTTCTTCGCTTGGTCGCACGTCAGATAAACTTGAGACAGAGATTAGTGAAACAACTATTCTTAAAGATCTTGACCTTAATTTTATATTTCTACTTCAGAAATCTTGGTTTCAAGATTTTAGCAGACAAATTGATATGGATTGTGAGCTTTTAGAACAAGAGGGAATTATGGACTATAGTCTGCTACTTGGCATTCATTTCAAAAATATATCTCAAGATGGAGATATTCTTCCTATAACACCTCCGACTCCTTCCGGTGATTCGGAAAACGAAGGAACTCCACATACTTCAACGGAAGACACAGAACAAAATCCTTCCGATCCATCTAGTTCACTATTAGGTATAAATATTCCAGCAAAAGCTGAAAGGACAGTAAGAAGAGGCGATATCGAAACACAACTAGTCGGAGAACCAATTGAAGAGTTCTATGATGTTCAACTTACATTTGGTATCATAGACATACTTCAAGACTATGATATCAGCAAGAAGCTTGAACATGCCTACAAATCTATTCAATATGACCCTACCTCCATATCAGCCGTAGATCCTAGACAATACTCGAGGCGTTTTCGTGATTTTATATTTAGAATATTCACAGAAGAAGTGACTCTTGAAATCTAG 2403 0.3912 MIGKDGGVFKAWEATVRRTHAVAKKRANSIFGIGTLSISSTDDEENNSIDDNEDHGNDTFELYNEEKVLPNGDYYTGQWAENFPHGEGKYLWTDGCMYVGEWFKGKTKGKGRFSWPSGATYEGEFKSGFMDGVGTYTGCNGETYKGQWVMNLKHGHGYKSYVNGDWYEGDWRRGVQDGKGRYEWRDMSHYIGEWKNGTIWGKGSFYWPNGNSFEGFWEDGLPKGDGTYRWQDGSCYIGIFSKDGMNKDEDGTLYPMDPSDERWNDWDPLELYNELNGYSVCPSDKVLVLPSQKRLAVWRSTKGGESVRPRRMSVDGRVSVGGEKPTDRMNLWDGGGSSHGGGSHHGGGGDGDASTGGNRTPPPLGSDYDDESIGSRIDDANDALNQLQPLKAPKKSKRQGETICKGHKNFELMLNLQLGIRHSVARPAPTASLDLKPSAFDPKEKVWTKFPPEGSKYTPPHPSCDFKWKDYCPVVFRTLRKLFNVDPADYMLSICGNDALRELSSPGKSGSFFYLTNDDRYMIKTMKKAEVKVLIKMLPAYYNHFKENQNTLLTKYYGLHCVKLNGPIQKKVRFIIMGNLFCSEYITHRRYDLKGSSLGRTSDKLETEISETTILKDLDLNFIFLLQKSWFQDFSRQIDMDCELLEQEGIMDYSLLLGIHFKNISQDGDILPITPPTPSGDSENEGTPHTSTEDTEQNPSDPSSSLLGINIPAKAERTVRRGDIETQLVGEPIEEFYDVQLTFGIIDILQDYDISKKLEHAYKSIQYDPTSISAVDPRQYSRRFRDFIFRIFTEEVTLEI 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03178 800 Gene3D - 150 196 - -
Trre13g03178 800 Gene3D - 49 104 - -
Trre13g03178 800 Gene3D - 197 254 - -
Trre13g03178 800 Gene3D - 105 149 - -
Trre13g03178 800 MobiDBLite consensus disorder prediction 300 376 - -
Trre13g03178 800 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 495 790 IPR002498 GO:0016307|GO:0046488
Trre13g03178 800 SMART PIPK_2 436 793 IPR002498 GO:0016307|GO:0046488
Trre13g03178 800 SMART morn 142 163 IPR003409 -
Trre13g03178 800 SMART morn 165 186 IPR003409 -
Trre13g03178 800 SMART morn 119 140 IPR003409 -
Trre13g03178 800 SMART morn 211 232 IPR003409 -
Trre13g03178 800 SMART morn 73 94 IPR003409 -
Trre13g03178 800 SMART morn 188 209 IPR003409 -
Trre13g03178 800 SMART morn 96 117 IPR003409 -
Trre13g03178 800 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 395 579 IPR027484 -
Trre13g03178 800 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 406 792 IPR002498 GO:0016307|GO:0046488
Trre13g03178 800 FunFam Phosphatidylinositol 4-phosphate 5-kinase 105 149 - -
Trre13g03178 800 Pfam MORN repeat 167 186 IPR003409 -
Trre13g03178 800 Pfam MORN repeat 98 119 IPR003409 -
Trre13g03178 800 Pfam MORN repeat 121 142 IPR003409 -
Trre13g03178 800 Pfam MORN repeat 213 234 IPR003409 -
Trre13g03178 800 Pfam MORN repeat 190 211 IPR003409 -
Trre13g03178 800 Pfam MORN repeat 144 165 IPR003409 -
Trre13g03178 800 Pfam MORN repeat 75 97 IPR003409 -
Trre13g03178 800 MobiDBLite consensus disorder prediction 670 708 - -
Trre13g03178 800 MobiDBLite consensus disorder prediction 677 707 - -
Trre13g03178 800 CDD PIPKc_AtPIP5K_like 409 791 - -
Trre13g03178 800 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 84 793 IPR023610 -
Trre13g03178 800 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 70 174 - -
Trre13g03178 800 PIRSF PIP5K_plant 13 796 IPR017163 GO:0005524|GO:0016308
Trre13g03178 800 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 162 252 - -
Trre13g03178 800 Gene3D - 580 792 - -
Trre13g03178 800 SUPERFAMILY SAICAR synthase-like 405 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03178 Trre-Chr13 38331902 38335613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03178 1 795 Acyl Lipid Metabolism Gene Families AT3G56960 62.159 0.0 1014
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03178 K00889 - gmx:100808754 1302.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03178 13 38331902 38335613 Trre13g03178 13 38331902 38335613 ECH