Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03167 ATGGCACCTATGCTTCTACGTCGTCTTCCTTTCCTTCGTTTCATGTCTTCTCGCAATTTCTTCACCCCTTCTTCCTTCCGTCTTCTTTCTTATCCTCATTCTTCTTCATCACTCCCTTTTTCTACTCTCTCTAAACCCAGGAAGAGGTTTTCTCTTAAGAAATTTTCAATTCCCAGTTTGGTGTCAAATGCAGTCACTCCAAGGGCATATATGTCTTCTTTATCAGCAGCTGAAGATATTCACAAGAATGAAGCTTCTAAAGCTTATGGTTCTGATCAAATTCAGGTGCTTGAAGGTTTGGACCCTGTAAGAAAAAGGCCTGGAATGTATATCGGAAGCACCGGCCCACGCGGGTTGCATCATTTGGTCTATGAAATTTTGGATAATGCTGTTGATGAAGCTCAAGCTGGATTTGCTTCCAAGATTGATGTTGTTTTACATGCAGATGATTCTGTGAGCATCACTGACAACGGTCGTGGGATTCCGACAGACATGCATCCAACTACAAAGAAATCTGCCTTAGAGACAGTGTTGACGATCTTGCATGCTGGTGGAAAATTTGGTGGCATCAATAGTGGCTACTCTGTTTCTGGAGGTTTACACGGTGTTGGTTTATCTGTTGTTAATGCCTTGTCTGAGGCACTAGAGGTAACAGTTTGGCGTGAAGGGTTAGAATACACACAAACATATTCTCGCGGGAAGCCTGTAACAACCCTGAATTGCGTCATGCTTCCTTTTGAAAATAAAGATCGTCAAGGAACACGTATCAAGTTTTGGCCTGACAAAGAAGTATTCACCACTGCTATTCAGTTTGAGTACAATACAATAGCTGGGCGCATTAGGGAGTTGGCTTTCCTTAACCCAAAGCTTACAATTGTGCTTCGAAAAGAGGACAACGATCCAGAAAAGGTCCAATTTAATGAGTATTTCTATGCTGGGGGATTGGCTGAATATGTGAAATGGCTTAATACGGATAAGAAAGCTGTTCATGATGTTCTAAGTTTCAGAAAAGTAACAGATGGAATAACAGTTGATATAGCTTTGCAATGGTGTGAAGATGCATACTCTGATACAATACTAGGATATGCTAATAGTATACGCACTGTTGATGGTGGCACTCATATCGATGGCATGAAGGCTTCTTTAACAAGAACACTAAATAATCTCGGAAAGAAATCAAAAGTTATCAAGGAAAAGGATATTACTTTAAGTGGTGAGCATGTGAGAGAAGGTTTAACATGTGTTGTCTCAGTCAAGGTCCCAAATCCAGAGTTTGAAGGACAAACAAAGACAAGGTTGGGAAATCCCGAGGTGCGGAAAGTGGTTGATCAATCTATTCAAGAATATCTTACTGAGTATTTGGAACTGCATCCAGATGTTCTTGACTCAGTGCTCTCCAAAGCTCTTAATGCTTTCAAGGCAGCTTTGGCTGCAAAAAGAGCAAGGGAGTTGGTGAGACAAAAGAGTGTATTGAGATCTTCATCTCTTCCGGGGAAACTTGCTGATTGTTCGTCATCAAATCCCGAAGACTGTGAAATTTTTATAGTTGAAGGTGATTCAGCTGGGGGAAGTGCTAAGCAAGGTCGTGATCGGCGCTTCCAGGCTATTCTCCCTTTGAGGGGTAAGATTCTGAATATTGAAAGGAGGGATGAAGCAGCAATGTACAAAAATGAAGAGATCCAAAATTTAATCCTTGGTCTTGGTCTCGGAGTGAAGGGAGAGGATTTTAAAAAGGATGCACTCCGATATCACAAGATTATTATTTTGACTGATGCTGATGTGGATGGTGCCCACATCCGAACTCTGCTACTGACATTTTTTTATAGATATCAGAGAGCTTTGTTTGATGAAGGTTACATATATGTTGGTGTTCCACCACTTTACAAGGTTGTAAGGGGAAAACAAGTGCACTATTGTTATGATGAAGCTGATCTTAAAAAACTTAAGAGCACATTCTCTCCTAATGCATCATACAACATGCAAAGGTTCAAAGGGCTGGGAGAGATGATGCCTTTACAACTATGGGAGACAACCATGGATCCAGAACAAAGGTTGTTGAAGAAGTTGACGGTTGAGGATGCAGCTGAAGCAAATATTGTTTTTTCCTCCCTTATGGGTGCTCGGGTGGATGTCCGGAAGGAGCTGATACAAAATGCTGCAAACATGATTAATCTTGATCAGCTAGATATTTGA 2193 0.4118 MAPMLLRRLPFLRFMSSRNFFTPSSFRLLSYPHSSSSLPFSTLSKPRKRFSLKKFSIPSLVSNAVTPRAYMSSLSAAEDIHKNEASKAYGSDQIQVLEGLDPVRKRPGMYIGSTGPRGLHHLVYEILDNAVDEAQAGFASKIDVVLHADDSVSITDNGRGIPTDMHPTTKKSALETVLTILHAGGKFGGINSGYSVSGGLHGVGLSVVNALSEALEVTVWREGLEYTQTYSRGKPVTTLNCVMLPFENKDRQGTRIKFWPDKEVFTTAIQFEYNTIAGRIRELAFLNPKLTIVLRKEDNDPEKVQFNEYFYAGGLAEYVKWLNTDKKAVHDVLSFRKVTDGITVDIALQWCEDAYSDTILGYANSIRTVDGGTHIDGMKASLTRTLNNLGKKSKVIKEKDITLSGEHVREGLTCVVSVKVPNPEFEGQTKTRLGNPEVRKVVDQSIQEYLTEYLELHPDVLDSVLSKALNAFKAALAAKRARELVRQKSVLRSSSLPGKLADCSSSNPEDCEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAMYKNEEIQNLILGLGLGVKGEDFKKDALRYHKIIILTDADVDGAHIRTLLLTFFYRYQRALFDEGYIYVGVPPLYKVVRGKQVHYCYDEADLKKLKSTFSPNASYNMQRFKGLGEMMPLQLWETTMDPEQRLLKKLTVEDAAEANIVFSSLMGARVDVRKELIQNAANMINLDQLDI 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03167 730 PRINTS DNA topoisomerase II family signature 153 166 - -
Trre13g03167 730 PRINTS DNA topoisomerase II family signature 598 615 - -
Trre13g03167 730 PRINTS DNA topoisomerase II family signature 118 133 - -
Trre13g03167 730 PRINTS DNA topoisomerase II family signature 618 630 - -
Trre13g03167 730 PRINTS DNA topoisomerase II family signature 660 676 - -
Trre13g03167 730 PRINTS DNA topoisomerase II family signature 198 212 - -
Trre13g03167 730 PRINTS DNA topoisomerase II family signature 361 374 - -
Trre13g03167 730 PRINTS DNA topoisomerase II family signature 513 527 - -
Trre13g03167 730 PRINTS DNA topoisomerase II family signature 580 596 - -
Trre13g03167 730 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 89 303 IPR036890 -
Trre13g03167 730 SUPERFAMILY Ribosomal protein S5 domain 2-like 314 484 IPR020568 -
Trre13g03167 730 FunFam DNA gyrase subunit B 313 485 - -
Trre13g03167 730 SMART topII5 118 721 IPR001241 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre13g03167 730 Gene3D - 312 491 IPR014721 -
Trre13g03167 730 FunFam DNA gyrase subunit B 86 312 - -
Trre13g03167 730 FunFam DNA gyrase subunit B 484 730 - -
Trre13g03167 730 Pfam Toprim domain 512 613 IPR006171 -
Trre13g03167 730 CDD HATPase_GyrB-like 119 304 - -
Trre13g03167 730 ProSiteProfiles Toprim domain profile. 511 626 IPR006171 -
Trre13g03167 730 SMART HKATPase_4 114 264 IPR003594 -
Trre13g03167 730 ProSitePatterns DNA topoisomerase II signature. 515 523 IPR018522 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre13g03167 730 PANTHER DNA GYRASE/TOPOISOMERASE SUBUNIT B 81 730 - -
Trre13g03167 730 SUPERFAMILY Type II DNA topoisomerase 488 726 IPR013760 GO:0003918|GO:0005524
Trre13g03167 730 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 116 263 IPR003594 -
Trre13g03167 730 Gene3D - 492 730 IPR013759 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre13g03167 730 Pfam DNA gyrase B subunit, carboxyl terminus 656 717 IPR002288 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre13g03167 730 NCBIfam DNA gyrase subunit B 89 726 IPR011557 GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265
Trre13g03167 730 PRINTS DNA gyrase subunit B signature 697 713 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre13g03167 730 PRINTS DNA gyrase subunit B signature 405 421 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre13g03167 730 PRINTS DNA gyrase subunit B signature 285 298 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre13g03167 730 PRINTS DNA gyrase subunit B signature 467 487 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre13g03167 730 PRINTS DNA gyrase subunit B signature 453 467 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre13g03167 730 PRINTS DNA gyrase subunit B signature 270 285 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre13g03167 730 PRINTS DNA gyrase subunit B signature 89 99 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre13g03167 730 PRINTS DNA gyrase subunit B signature 563 572 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre13g03167 730 PRINTS DNA gyrase subunit B signature 681 693 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre13g03167 730 PRINTS DNA gyrase subunit B signature 313 335 IPR000565 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre13g03167 730 CDD TopoII_Trans_DNA_gyrase 313 467 - -
Trre13g03167 730 Pfam DNA gyrase B 314 483 IPR013506 GO:0003677|GO:0003918|GO:0005524|GO:0006265
Trre13g03167 730 CDD TOPRIM_TopoIIA_GyrB 511 625 IPR034160 -
Trre13g03167 730 Gene3D - 85 311 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03167 Trre-Chr13 38178034 38186913 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03167 K02470 - gmx:100807172 1204.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03167 13 38178034 38186913 Trre13g03167 13 38178034 38186913 ECH