Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03165 ATGTGGACTCTTCGTCGAGCTTCATTACCTCTCAGGAAGAGTGGTTTAAATGTAAGGGTTTCTTGTGTCAAATTAATGCCAAATACTCTTGTTGATGATGAGGCTGAAATTTCTGATTCTCCTAAAATAGTTTACGGCAATGGTGGATTTTCATTGCGGAATAGATGTTATCATTCTGGATATGGTTCTATGGGATTTAGTGTTGGTAGACGCGAGCTTTCTTCGGAAGCCGGTGCAAAAGATACAAAAGATGAGGATGATGATGATTTGGAGGAAGGGTTTTCGGAATTGGAGGAGGGGTTTTCGGAATTGGAGGAGACGCCTGTAGGTGATGAAGGAGAAAAATTGTTGGATTCTGATACTGAATTGTCTGATGGTAGTGTTAGTGAGGAATCTGATATTGAGGAACCACACAATGAGCTGGAGTTACCGTTATCGCATAATGAAGATGAGATTTTGGAGGTGAAGATTCGAAGAAGGGCTGAGTCTGAACTATTCAAGGCGATTATGGCTGCTCCGGGTCACACTATTCATACGGCTTTGGATAAGTGGGTTGAAGAAGGGAAGGAACTGAGCAGACAGGAGATCTCGTTGGCTATGGTTAATCTTCGGAAACGTAAGATGTATGGGAGAGCTTTGCAGCTCTCGGAGTGGCTTGAATCAAAAAACCATCTTGAATTTGCTGAAAAGGATTACGCTTCCCGGCTTGATTTGATTGCCAAATTGCATGGCCTATATAAGGCAGAAGTTTACGTTGAGTGTATTCCAGAATCTTTTAGAGGGGAGATAATATACCAAACTTTAATGGCTAACTGTGTTTCTCAGAACAATTTGAAGAAAGTAGAGGAGATTTTTAATAAAATGAAGGATTTAAAGTTTCCTCTTAAAGTTTTTGTATGCAATCAGTTGCTCCTTCTGTATAAGAAGAATGACAGAAAGAAAATAGCTGACGTGTTATTGCTGATGGAGCACGAGAATGTCAAACCTTCTCCTTTAACTTTTAAAATTTTAATAGATGTAAAAGGTCAGTCTAATGATATTAATGGAATGGATCAAATTGTTGATAAAATGAAAGCTGAGGGTATTGAACCGGACATCCAAACAAAGGCAATTTTGGTTGGGCATTACATCTCAGCTGGGCTTGCTGATAAAGCTAAATCGTTGTTGAAGGAGATGGAAGGTGAAAACTTGAAGGAGAATCGTGGGGTTTGTCGGTCTTTGCTTCCTCTCTATGCAAACTTGGGAATGGCAGATGATGTGGAAAGAGTTTGGAAGGTCTGTGAGGCACACCCTTGGCTTGAGGAGTGTTTGGCTGCAATTGAAGCCTGGGGCAAGTTGAAGAAAATTGATGAAGCAGAGGCAGTTTTTGAGACGATGTCAAAAAAATGGAAGCTTACGTCCAGGAACTGCTCAGTACTACTGAAGGTTTATGCAAACCACAAGATGCTATTGAAGGGCAAAGATCTTATTAAGCGAATGGCAGATAATGGGTGTCAAATAGGTCCATTGACTTGGGATGCATTGGTCAAACTTTATGTCCAAGCAGGGGAAGTGGAGAAGGCAGATAGTCTTCTTCAGAAGGCAGTCATGCAGAGTCAGGTGAAGCCATTATTTTCTTCCTATCTCACTATTCAGGAGCAGTATGCTAAGATGGGTGACATCCATAATACGGAGAAGATCTTCTATAGAATGAAACAAGTTGGTTATGCTCCTCGATTAAGGCAGTACCAAGTTCTTATAGGGGCCTATATAAATGCCAAGGTTCCAGCTTATGGGATTAGGGACAGGTTGAAAGCTGATAATGTATATCCCAACAGAAATTTGGCTAACATGTTGTTTCAAGTTGATGGATTTAGGAAGAGTCAGGTTTCCGATTTGCTTGATTGA 1887 0.4075 MWTLRRASLPLRKSGLNVRVSCVKLMPNTLVDDEAEISDSPKIVYGNGGFSLRNRCYHSGYGSMGFSVGRRELSSEAGAKDTKDEDDDDLEEGFSELEEGFSELEETPVGDEGEKLLDSDTELSDGSVSEESDIEEPHNELELPLSHNEDEILEVKIRRRAESELFKAIMAAPGHTIHTALDKWVEEGKELSRQEISLAMVNLRKRKMYGRALQLSEWLESKNHLEFAEKDYASRLDLIAKLHGLYKAEVYVECIPESFRGEIIYQTLMANCVSQNNLKKVEEIFNKMKDLKFPLKVFVCNQLLLLYKKNDRKKIADVLLLMEHENVKPSPLTFKILIDVKGQSNDINGMDQIVDKMKAEGIEPDIQTKAILVGHYISAGLADKAKSLLKEMEGENLKENRGVCRSLLPLYANLGMADDVERVWKVCEAHPWLEECLAAIEAWGKLKKIDEAEAVFETMSKKWKLTSRNCSVLLKVYANHKMLLKGKDLIKRMADNGCQIGPLTWDALVKLYVQAGEVEKADSLLQKAVMQSQVKPLFSSYLTIQEQYAKMGDIHNTEKIFYRMKQVGYAPRLRQYQVLIGAYINAKVPAYGIRDRLKADNVYPNRNLANMLFQVDGFRKSQVSDLLD 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03165 628 Gene3D Tetratricopeptide repeat domain 261 441 IPR011990 GO:0005515
Trre13g03165 628 PANTHER OS12G0527900 PROTEIN 73 605 - -
Trre13g03165 628 NCBIfam pentatricopeptide repeat 264 293 IPR002885 -
Trre13g03165 628 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 436 622 - -
Trre13g03165 628 Gene3D Tetratricopeptide repeat domain 442 627 IPR011990 GO:0005515
Trre13g03165 628 MobiDBLite consensus disorder prediction 99 139 - -
Trre13g03165 628 Pfam Pentacotripeptide-repeat region of PRORP 265 423 IPR033443 -
Trre13g03165 628 Pfam PPR repeat 504 527 IPR002885 -
Trre13g03165 628 Pfam PPR repeat 471 498 IPR002885 -
Trre13g03165 628 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 536 IPR002885 -
Trre13g03165 628 Pfam Pentatricopeptide repeat domain 533 584 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03165 Trre-Chr13 38134869 38137689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03165 168 568 EF-hand Containing Proteins AT1G02150 23.430 6.87e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03165 - - tpra:123891250 1049.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03165 13 38134869 38137689 Trre13g03165 13 38134869 38137689 ECH