Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03164 ATGGATCAAGGAGAACTTGCCCGAATTTTTCAAATGTTTGATCGAAATGGGGATGGTCGTATTACAAGAAAAGAACTTAGCGACTCATTACAAAATCTCGGTATTTGTATCTCCGAACAAGATTTGATCCAAATGATTGAAAAAATCGACGTAAATGGAGATGGATATGTTGACATTGACGAATTTGGTGAGTTATACCAAACGATAATGGATGACAAAGACGAGGAGGAGGATGATATTAAAGAGGCATTTAATGTGTTTGATCAAAATGGAGATGGGTTTATATCGGGTGAGGAATTAAGCGCGGTGTTATCTTCTTTGGGCTTAAAACATGGAAAAACTTTAGAAGATTGCAAAAATATGATCAAGAAAGTTGATGTAGATGGTGATGGAATGGTTAATTTCAAAGAATTTAAGCAAATGATGAAGGCTGGTGCTTTTGCTGCTGATTCATTAAGTTGA 462 0.3571 MDQGELARIFQMFDRNGDGRITRKELSDSLQNLGICISEQDLIQMIEKIDVNGDGYVDIDEFGELYQTIMDDKDEEEDDIKEAFNVFDQNGDGFISGEELSAVLSSLGLKHGKTLEDCKNMIKKVDVDGDGMVNFKEFKQMMKAGAFAADSLS 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03164 153 ProSitePatterns EF-hand calcium-binding domain. 88 100 IPR018247 -
Trre13g03164 153 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Trre13g03164 153 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 76 143 - -
Trre13g03164 153 CDD EFh 83 143 IPR002048 GO:0005509
Trre13g03164 153 Gene3D - 69 144 - -
Trre13g03164 153 Pfam EF-hand domain pair 78 143 IPR002048 GO:0005509
Trre13g03164 153 Pfam EF-hand domain pair 6 67 IPR002048 GO:0005509
Trre13g03164 153 FunFam Calmodulin-like protein 3 1 70 - -
Trre13g03164 153 FunFam calmodulin-like protein 3 73 146 - -
Trre13g03164 153 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Trre13g03164 153 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Trre13g03164 153 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Trre13g03164 153 ProSitePatterns EF-hand calcium-binding domain. 126 138 IPR018247 -
Trre13g03164 153 SUPERFAMILY EF-hand 5 142 IPR011992 -
Trre13g03164 153 ProSiteProfiles EF-hand calcium-binding domain profile. 113 148 IPR002048 GO:0005509
Trre13g03164 153 Gene3D - 2 68 - -
Trre13g03164 153 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Trre13g03164 153 PRINTS Parvalbumin signature 66 84 - -
Trre13g03164 153 PRINTS Parvalbumin signature 125 138 - -
Trre13g03164 153 PRINTS Parvalbumin signature 88 104 - -
Trre13g03164 153 CDD EFh 5 62 IPR002048 GO:0005509
Trre13g03164 153 SMART efh_1 117 145 IPR002048 GO:0005509
Trre13g03164 153 SMART efh_1 5 33 IPR002048 GO:0005509
Trre13g03164 153 SMART efh_1 41 69 IPR002048 GO:0005509
Trre13g03164 153 SMART efh_1 79 107 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03164 Trre-Chr13 38130243 38130704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03164 1 149 EF-hand Containing Proteins AT3G07490 78.523 7.25e-74 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03164 K13448 - gmx:100806637 267.314