Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03159 ATGCTTTATTACTTTCTTATATCTTTTGTTTCCTTTGTTATGATCCTTTCAAAATCATTTACAAATAAACCAATCTCATCCAATGGGACAAAACTAGTTTCAAATGTATTTTGTGAAAAGCTTTTAAGTTTTTTAGCTTCTAGGATCAAAACAAGAACTAGTTGTTTTCTAGCTTTTAGTTTTTTTCAATTTTCTCTTAGCATGCAATTATCAAACAAGAGTTTAGCATCAAAATTTGAGCATGGAGAAGAAGAGGTAGAGAAAGTTTCTCTTTTGGATTTGCATGATTTACCATTAGATTGTATCCTTGAAAAACTTTCACCAAGTGAATTATGCAATGTAGCAAAAGTGTGTAAATCTCTTAGAAAAAGATGTAGAAGTGATTATTTTTGGGAGAAACATATGAAGATGAAATGGAGTAAAGTTTTAGGTGATGCTTCTTATAGAGAATGGAAATGTTATGTAGCTTCAAGAAACATAGAAAAAAGTTCAAATCAACACAAAAATCATAAAACAATACTTGATTTTCTTCATGGTTTTCTTCCTTTTTTTTGGATTAAATCAAAATCAGAAAATGATATGAAGTCAAGGCAGCTAGATGATTCAATTGCTGCTCTTTATCTTTCTCTTGAGAATGGAAATTTTTGGTTCCCTGCTCAAGTTTATAACCGTGAGAATGGTCATGCTGGATTCATGCTTTCATGTTATGATGCTCAACTTTGCTATGACTATAGAACAAATACTTTTCAAGCAAGGTATTCACCTAATGGGAGATGGACAATTGAGGAAAACATAAAATGGGAGAGGCTAAGAGTGCCACCTATTGACTCTTCTTCACATGTTCTTCATATCTCTGATTGTTTAGATGATTTAAGGCCTGGAGATCATGTTGAAATCCAATGGAGAAGAAACAAAGAATTCCCTTATGGTTGGTGGTATAGTGTCATTGGTCATTTGGAAACATGTCAAGAGCAAGGGAACCATTGCCAATGTCACAATAAAGATACAGTGATTTTGGAGTTCACACAATACACAGTTGGTTCAAGATGGAGACAAACAATGATAAACAGAAAGAATCATATAGAACAAGGAAATGAAATAGAAGGTTTCTATGGAGGAATAAGAAAGTTGCATAGCAAAGAGGAAATTACAAGGTGGAAGAAACTTTGGCCAACAAAAATTGTGGAATAG 1191 0.3275 MLYYFLISFVSFVMILSKSFTNKPISSNGTKLVSNVFCEKLLSFLASRIKTRTSCFLAFSFFQFSLSMQLSNKSLASKFEHGEEEVEKVSLLDLHDLPLDCILEKLSPSELCNVAKVCKSLRKRCRSDYFWEKHMKMKWSKVLGDASYREWKCYVASRNIEKSSNQHKNHKTILDFLHGFLPFFWIKSKSENDMKSRQLDDSIAALYLSLENGNFWFPAQVYNRENGHAGFMLSCYDAQLCYDYRTNTFQARYSPNGRWTIEENIKWERLRVPPIDSSSHVLHISDCLDDLRPGDHVEIQWRRNKEFPYGWWYSVIGHLETCQEQGNHCQCHNKDTVILEFTQYTVGSRWRQTMINRKNHIEQGNEIEGFYGGIRKLHSKEEITRWKKLWPTKIVE 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03159 396 SMART fbox_2 97 134 IPR001810 GO:0005515
Trre13g03159 396 ProSiteProfiles F-box domain profile. 88 134 IPR001810 GO:0005515
Trre13g03159 396 Gene3D - 83 168 - -
Trre13g03159 396 PANTHER ESTS AU081301(E20138) 3 395 - -
Trre13g03159 396 Pfam F-box domain 93 133 IPR001810 GO:0005515
Trre13g03159 396 SUPERFAMILY F-box domain 94 352 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03159 Trre-Chr13 38061816 38064357 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03159 - - gmx:100806109 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03159 13 38061816 38064357 Trre13g03159 13 38061816 38064357 ECH