Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03157 ATGATGAACGGAGGCCCATCTGGTTTCACAAATGCTCCTGTTACAAGGGCTTTCGTCATCGCCTCAGGGCTTTTCTCAATTTTCTTTGGGATCCAAGGTCGTTTCAACACTCTTGGATTATCTTATCAGGATATATTTGGAAAGATTCGCATATGGAAGTTGATTATGTTCATATTTTCCTTCACATCAACACCAGAGTTGATGTTTGGACTATATCTGCTATATTACTTCAGGGTATTTGAGAGACAAATTGGTTCCAATAAATGCTCAGTATTTATTGTGTTCTCCATATTAACATCACTTCTGTTTGAAGTATTTGCTGTTGCACTTTTAAAAGATCCTTCAGCAACCCTAGTCACTCCTGGACCTTATGGCCTTATATTTGCTTCGTTTGTACCCTTTTTCTTTGACATTCCCGTTTCAACACGGTTCCGTATGTTTGGCTTCAACTTCTCTGATAAGTCAATCATATATGTAGCTGGACTTCAGCTTCTACTGTCACATTGGAAAAAGTCCGTCTTACCAGGGATATGTGGCATCCTTGCTGGTTCCTTATACCGTTTGAATGTCTTTTATATCCGCAAAGCAAAGTTCCCGGAGTTTATTTCATCATTCTTTGCACGAATTTCCTTGCCATCCATCGGAGGTCCACGCACAACACCAATAAGGAATGTTACGGGGAATGTACCATCCTTCCCAGGTCGCCAAATGGAGAGAAACTATCCAGCTCCTCCAATGCATTCTGCAGTAGAACCATCAGAGGACTCAATCGCGACCCTTGTTTCAATGGGATTTGACAGGAATTCTGCTCGACAAGCCCTAGTGCAGGCCAGAAATGATGTGAATGTGGCGACAAACATCCTACTGGAGGCACAGTCCCACTAA 885 0.4226 MMNGGPSGFTNAPVTRAFVIASGLFSIFFGIQGRFNTLGLSYQDIFGKIRIWKLIMFIFSFTSTPELMFGLYLLYYFRVFERQIGSNKCSVFIVFSILTSLLFEVFAVALLKDPSATLVTPGPYGLIFASFVPFFFDIPVSTRFRMFGFNFSDKSIIYVAGLQLLLSHWKKSVLPGICGILAGSLYRLNVFYIRKAKFPEFISSFFARISLPSIGGPRTTPIRNVTGNVPSFPGRQMERNYPAPPMHSAVEPSEDSIATLVSMGFDRNSARQALVQARNDVNVATNILLEAQSH 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03157 294 PANTHER RHOMBOID-RELATED PROTEIN 2 238 - -
Trre13g03157 294 Pfam Rhomboid family 50 190 IPR022764 GO:0004252|GO:0016020
Trre13g03157 294 Gene3D - 234 293 - -
Trre13g03157 294 SUPERFAMILY UBA-like 240 291 IPR009060 GO:0005515
Trre13g03157 294 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 251 291 IPR015940 -
Trre13g03157 294 SMART uba_6 253 290 IPR015940 -
Trre13g03157 294 Pfam UBA/TS-N domain 253 288 IPR015940 -
Trre13g03157 294 SUPERFAMILY Rhomboid-like 10 195 IPR035952 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03157 Trre-Chr13 38048683 38054493 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03157 K25216 - gmx:100805217 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03157 13 38048683 38054493 Trre13g03157 13 38048683 38054493 ECH