Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03152 ATGAATAACGTTGCCGGGAGACCACTTAATGGAGATGTAGAAGATGATGATGAAGATGAAGCTAACGATGATGGGCTTGAAGCATGGGAGAGAGCTTATACAGAAGATAGATCGTGGGAGTCTTTGCAGGAGGATGAATCTGGACTTCTTCGTCCCATAGATACTACAGCCGTTCAGCATGCCCAGTATCGTAGGCGCCTTCGCGCCCTTGCTTCAAGTGCAGCTACTGCTCGAATTCAGAAGGGCTTGATACGATACTTATACATTGTTGTGGACCTGTCCAAGGCAGCTTCAGAGAGGGACTTTCGACCAAGTAGAATGGCTGTGATTGCAAAGCAGGTTGAGACATTTATCAGGGAGTTCTTTGATCAGAATCCACTTAGTCATGTTGGTTTGGTGACTACCAAAGACGGGGTTGCTAATTGCTTGACTGATCTTGGTGGCGGTCCTGAGTCCCACATCAAAGCTTTGATGGGTAAACTAGAATGCTCAGGTGATGCCTCCCTACAAAATGCACTCGAACTTGTTCATAGCAATCTAAATCAAATCCCGTCATATGGTCATCGAGAAGTTCTGATTTTATACTCGGCCCTCAGTACATGTGATCCTGGTGATCTCATGGAAACTATCCAAAAATGCAAAAGGAGTAAAATAAGATGCTCTGTCATTGGTCTTGCTGCTGAAATGTTTATATGCAAGCATCTTTGTCAAGAAACTGGAGGAACCTATTCAGTTGCACTAGATGAGTCCCACTTTAAAGAGTTAATTCTCGAGCACTCTCCACCACCTCCAGCAATAGCAGAGTATGCTACGGCTAATTTGATTAAGATGGGTTTCCCACAAAGAGCAGCTGAGGGTTCTGTTGCAATTTGTACATGTCATGAAGAGGCTAAGACCGGAGGGGGATACACTTGTCCAAGATGCAAAGTTCGTGTCTGTGAGCTTCCTACTGAATGCCGCATCTGCGGATTGACCCTTATTTCTTCGCCCCATTTGGCAAGGTCGTATCATCATCTCTTCCCTATAGTACCATTTGCTGAGATCTCTCCATCATCCCAAAATGATCCGAGCCATAATTTTACCAATACTTGTTTTGGTTGTCAGCAAAGTCTCCTTAGTCAGGGAAACAAGCCTGAACTTTCTGTCTCCTGCCCAAAATGCAAACAACAATTCTGCCTTGATTGCGACATCTACATTCATGAGAGCTTACATAACTGCCCAGGCTGTGAGAGTTTCAGGCATTCTAAGTCAGTTACTAGTGCCCAATGA 1269 0.4468 MNNVAGRPLNGDVEDDDEDEANDDGLEAWERAYTEDRSWESLQEDESGLLRPIDTTAVQHAQYRRRLRALASSAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVIAKQVETFIREFFDQNPLSHVGLVTTKDGVANCLTDLGGGPESHIKALMGKLECSGDASLQNALELVHSNLNQIPSYGHREVLILYSALSTCDPGDLMETIQKCKRSKIRCSVIGLAAEMFICKHLCQETGGTYSVALDESHFKELILEHSPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRICGLTLISSPHLARSYHHLFPIVPFAEISPSSQNDPSHNFTNTCFGCQQSLLSQGNKPELSVSCPKCKQQFCLDCDIYIHESLHNCPGCESFRHSKSVTSAQ 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03152 422 Pfam TFIIH C1-like domain 363 411 IPR004595 GO:0006281|GO:0008270
Trre13g03152 422 SMART VWA_4 84 260 IPR002035 -
Trre13g03152 422 CDD vWA_transcription_factor_IIH_type 82 264 IPR007198 -
Trre13g03152 422 Gene3D von Willebrand factor, type A domain 80 265 IPR036465 -
Trre13g03152 422 FunFam General transcription factor IIH subunit 2 80 265 - -
Trre13g03152 422 SUPERFAMILY vWA-like 81 248 IPR036465 -
Trre13g03152 422 PIRSF TFIIH_SSL1 6 412 IPR012170 GO:0000439|GO:0006289|GO:0006351
Trre13g03152 422 ProSitePatterns Zinc finger C2H2 type domain signature. 384 404 IPR013087 -
Trre13g03152 422 ProSiteProfiles VWFA domain profile. 86 225 IPR002035 -
Trre13g03152 422 Pfam Ssl1-like 90 280 IPR007198 -
Trre13g03152 422 FunFam General transcription factor IIH subunit 340 417 - -
Trre13g03152 422 NCBIfam transcription factor ssl1 302 411 IPR012170 GO:0000439|GO:0006289|GO:0006351
Trre13g03152 422 MobiDBLite consensus disorder prediction 1 26 - -
Trre13g03152 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 340 418 IPR013083 -
Trre13g03152 422 SMART C1_4_2 363 411 IPR004595 GO:0006281|GO:0008270
Trre13g03152 422 SUPERFAMILY Cysteine-rich domain 337 410 IPR046349 -
Trre13g03152 422 PANTHER GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 20 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03152 Trre-Chr13 37928380 37931725 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03152 K03142 - gmx:100803090 760.755