Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03144 ATGATAAGTGCTTTAGACTTATACCATGTTCTCACAGCAGTAGTACCACTCTATGTAGCTATGATCCTTGCCTATGGTTCAGTAAAATGGTGGAAAATTTTCACACCAGATCAATGTTCTGGTATAAACCGTTTTGTAGCACTTTTTGCAGTTCCACTTCTCTCATTTCATTTCATCTCAACCAACAATCCATACACTATGAACTACAAATTCATAGCTGCTGATTCACTTCAAAAATCAATCATCTTAATAATCCTTTTCATTTGGTCAAGAACAAGCTCAAGAGGTTCATTAGAATGGTCTATAACACTTTTCTCACTCTCAACACTCCCTAACACACTTGTTATGGGTATACCTTTGTTAAAAGGAATGTATGGTGATGATTCTGGTACTCTAATGGTTCAAATCGTTGTTCTTCAATGTATCATTTGGTATACATTGATGTTGTTTCTTTTTGAGTACAGAGGTGCAAGGATTCTCATTGGTGAACAGTTTCCTGATACTGCTGGTTCTATCATCTCATTCAAAGTTGATTCTGATGTTCTTTCTTTGGATGGGAAAGAACCTCTTCAAACTGAAGCTGAAGTTGGTGAAGATGGTAAACTTCATGTAAAAGTAAGAAAATCAACAAGTTCAAGAAGTGAGATTTTTTCTAGGCCTTCTCATGGTGGTGTTTCTTTGACACCAAGACCTTCAAATTTGACAAATGCTGAGATTTATTCACTTCAATCTTCAAGAAATCCTACACCAAGAGGGTCTAGTTTTAATCACAGTGATTTTTACTCTATGGTTAATGGAAGAAATGTTAGTCCAAGACAATCAAATTTTGGAAGTTTAGGTTTTGATGAGGAAAGTGGTGTTGGTAGAGTAAATGGAGGTGCAAATAGTGGAAATGGTGGAAATGGGTACCCTACACCTCATAGTGCTGGAATTTTTTCACCTGTGGCTAATAAGAAAAAGGGTCATGGTGGTGGTGATGGAAAAGATCTTCATATGTTTGTTTGGAGTTCAAGTGCTTCACCTGTTTCTGAAGGTGGAATTCATGTCTTTAGAGGTGGAGGTGATTATGGCAATGATCAACTTAATGGAGCAGCTCACCAAAAAGATTATGAAGAATTTAGCCATGATGAATTTAGCTTCGGAAATAGAACTGTTGCTAATGGTGTAGACAAAGAAGGACCAGTGCTTTCAAAGCTTGGTTCAAGTTCAACTACTGAGCTTCATCCAAAAGCTGGTTCTCAAAGTGATTCTAAGCCAACAAACATGCCACCTGCTAGTGTTATGACAAGACTTATTTTGATTATGGTTTGGAGAAAATTGATTAGGAATCCTAATACTTATTCTAGTCTTATTGGTCTCATTTGGTCTTTGATCTCATTTAGGTGGAATATTGTTATGCCTGCAATTATTGCCAAGTCAATAGCAATTTTATCTGATGCTGGCCTTGGAATGGCTATGTTTAGCCTTGGATTGTTCATGGCATTACAACCAAGGATTATTGCTTGTGGAAACACAGTTGCTTCATTTGCAATGGCGGTTCGTTTCCTTACTGGCCCGGCTGTGATGGCTGTTTCGTCGATTGTTGTAGGACTTAGGGGAGTCCTGTTGCACATTGCTATTGTACAGGCTGCTCTTCCCCAAGGAATTGTTCCCTTTGTGTTTGCCAAGGAATACAATGTTCATCCTGACATTCTTAGCACTGGGGTTATATTTGGAATGCTAATTGCTCTTCCAATTACACTAGTTTACTACATTTTGTTGGGACTTTGA 1770 0.3791 MISALDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNNPYTMNYKFIAADSLQKSIILIILFIWSRTSSRGSLEWSITLFSLSTLPNTLVMGIPLLKGMYGDDSGTLMVQIVVLQCIIWYTLMLFLFEYRGARILIGEQFPDTAGSIISFKVDSDVLSLDGKEPLQTEAEVGEDGKLHVKVRKSTSSRSEIFSRPSHGGVSLTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHSDFYSMVNGRNVSPRQSNFGSLGFDEESGVGRVNGGANSGNGGNGYPTPHSAGIFSPVANKKKGHGGGDGKDLHMFVWSSSASPVSEGGIHVFRGGGDYGNDQLNGAAHQKDYEEFSHDEFSFGNRTVANGVDKEGPVLSKLGSSSTTELHPKAGSQSDSKPTNMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLISFRWNIVMPAIIAKSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTVASFAMAVRFLTGPAVMAVSSIVVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03144 589 MobiDBLite consensus disorder prediction 397 423 - -
Trre13g03144 589 Pfam Membrane transport protein 9 584 IPR004776 GO:0016020|GO:0055085
Trre13g03144 589 MobiDBLite consensus disorder prediction 391 423 - -
Trre13g03144 589 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 589 - -
Trre13g03144 589 NCBIfam auxin efflux carrier 1 589 IPR014024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03144 Trre-Chr13 37828474 37830940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03144 1 580 Organic Solute Cotransporters AT1G73590 64.151 0.0 742
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03144 K13947 - gmx:100820506 993.416
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03144 13 37828474 37830940 Trre13g03144 13 37828474 37830940 ECH