Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03143 ATGCACAAAATTGTGCAAAGGGTGCGATTCTTCAATCGTTCACCACACTCGCACTTACACCAATCTCAATTTCTTTCCGCCTTTTCAAACCCTGATCCAACGTTTTCATCTTATGCTGCAATGGATGCAACTCACAGTGTTGTTGAATCTCTTCATTTTCGGGAAGTTACAAACACAAGAGAACTTAGGAGTGCATTTGACAAATACGATAAAAACGTTTCATCTCGATGCCTGAACTGGACTTCGAGGGAAAATGATAATCATCATGCTGCCAGCTATGCGGTAAACCGTCATTTTAGAGCTGATCACAATGATAGATGCAGAAAGGAGTTCTCAAGTAAGCTTCTTAAAAATATTCCAGACTTTGTTAAGATAGTGGAGGTTGGTGCAAGGGATGGATTGCAAAATGAGAAGGTTATTGTTCCCACTGATGTGAAAACTAAATTGATAAAACTGCTTGTATCTTCTGGGTTGTCCGTTGTTGAGGCGACGAGTTTTGTCTCACCAAAATGGGTGCCACAGTTGGCAGATGCAAAGGATGTATTGGCAGCAATTCGAGACGTTGAAGGTGCTAGTTTTCCTGTCTTAACTCCAAATCTCAAAGGTTTTGAAGCAGCTGTTGCTGCTGGAGCTAAGGAAGTGGCTGTTTTTCCTGCTGCTTCTGAATCATTCTCTAAAGCCAATCTCAATTGTGGCATTGAGGATAACCTTGCTCGTTGCCGTGACATTGTTTCAGCTTCTAGAAGCCTCTCGATCCCAGTTCGTGGATACATATCATGTGTTGTTGGATGTCCTCTGGAAGGAAAAATTGCTCCAGCAAAAGTAGCATACGTTGCAAAATCACTTTATGAGATGGGGATCTCTGAGATTTCATTAGGGGATACAATTGGTGTTGGTACACCGGGTACCATCATTCCTATGCTTGAAGCTGTTCTGGATGTCGTTCCTGTTGACAAGCTTGCTGTCCACTTTCATGATACTTATGGTCAGGCACTATCAAATATTCTAATTTCACTACAGATGGGAATCAGCACAGTGGATTCATCTGTCTCTGGTCTTGGAGGTTGTCCATATGCAAAAGGTGCAACTGGGAATGTTGCCACTGAGGATGTTGTTTATATGCTGAATGGACTTGGAGTTAAAACTAATGTGGACCTTGGAAAACTTATGCTTGCTGGGGATTTCATCTGCAAGCATTTAGGACGTGCATCTGGTTCAAAAGCTGCAACTGCATTGAATAAAGTTACAACCCATGCCTCCAAACTGTGA 1269 0.4224 MHKIVQRVRFFNRSPHSHLHQSQFLSAFSNPDPTFSSYAAMDATHSVVESLHFREVTNTRELRSAFDKYDKNVSSRCLNWTSRENDNHHAASYAVNRHFRADHNDRCRKEFSSKLLKNIPDFVKIVEVGARDGLQNEKVIVPTDVKTKLIKLLVSSGLSVVEATSFVSPKWVPQLADAKDVLAAIRDVEGASFPVLTPNLKGFEAAVAAGAKEVAVFPAASESFSKANLNCGIEDNLARCRDIVSASRSLSIPVRGYISCVVGCPLEGKIAPAKVAYVAKSLYEMGISEISLGDTIGVGTPGTIIPMLEAVLDVVPVDKLAVHFHDTYGQALSNILISLQMGISTVDSSVSGLGGCPYAKGATGNVATEDVVYMLNGLGVKTNVDLGKLMLAGDFICKHLGRASGSKAATALNKVTTHASKL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03143 422 SUPERFAMILY Aldolase 119 418 - -
Trre13g03143 422 CDD DRE_TIM_HMGL 125 398 - -
Trre13g03143 422 Gene3D Aldolase class I 116 415 IPR013785 -
Trre13g03143 422 ProSiteProfiles Pyruvate carboxyltransferase domain. 123 390 IPR000891 GO:0003824
Trre13g03143 422 FunFam Hydroxymethylglutaryl-CoA lyase, mitochondrial 117 415 - -
Trre13g03143 422 Pfam HMGL-like 123 395 IPR000891 GO:0003824
Trre13g03143 422 PANTHER HYDROXYMETHYLGLUTARYL-COA LYASE 97 416 IPR043594 GO:0016833
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03143 Trre-Chr13 37787325 37793598 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03143 K01640 - gmx:100801507 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03143 13 37787325 37793598 Trre13g03143 13 37787325 37793598 ECH