Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03117 ATGGATTCATCGTTTGTCTCCAACGATGTTGTTTCTGGGTTCAAAGATAAGGAGTCAATGGTTGACCCTTTTTTGGTTGAGGCTCTTCAGAACCCTCGTCATCGTCTTACAATTCTGCGGATGGAGCTGGATATCCAGAAATTTATGAATAACGCTGATCAGCATCATTTTGAATTTCAACATTTCCCTTCTTCTTATCTCCGATTGGCTGCACATCGTGTTGCTCAACACTACAGCTTGCAAACAATGGTTCAAGACAATGGATTAGATGGCCAAAGTAAAATTTTGGTCAGAAAGTTACCTGAAAGCAAGTACCCTGTAGTTCGCTTATCTGAAATACCTGCAAAACAGTTGGACAATGAGAAATCTGAACTGAAAAAAATCGTCATTCGACCTAGGCCTCAAAACACTGGTTTGAATGGAGCTAATGATTCCTCAAAAAAAGGAAACCCATTGAGAAGTGTAGAAGAGAGGAAGGAGGAGTATGATCGGGCACGGGCACGTATCTTTAATGGCTCTGCAAGCTTTGATTCAGTTGATACCTCATCCATGGTCCCAATAGATGGGAAAAGTTATGTAATGAACAAGGATGAGAATGAAACTAGCAAAATCCCCATGGCCGATCCAGAAAGATGCATTAGTTTCAGGGATAATAGTTATCCTCGAGTTGCCATTATCAGAGATAGGGAAAAGGATCGAAGTGATCCAGATTATGATCGTAGCTATGGAAGGTATGCTAGGAGTTTATCTGCCTCTGCAATTAACTTGGTGCCATTTAATTTGCCAAATGCTCAACCTTCATTTGCTCAGTATGACACTACTTTCAATCAGTTGGGTCAGATGCCGCAAACTCAGGCTTCACTTGGATATGGGCTTCCTTCAACCCCGATGATGAGTCCTTTTGTTACCCCGGCTTTGAATCCGACATCCGGTGATGGTGGTTACCTACAGTGGCCAAGTCCTACAATGATGTATGCACATTCATATGACCAATTTAGACATGCTGTTTACCAGGCTCCATTTGGTCAACCGTTGAGCTTTGACTATTCACAGAACTATTAG 1062 0.42 MDSSFVSNDVVSGFKDKESMVDPFLVEALQNPRHRLTILRMELDIQKFMNNADQHHFEFQHFPSSYLRLAAHRVAQHYSLQTMVQDNGLDGQSKILVRKLPESKYPVVRLSEIPAKQLDNEKSELKKIVIRPRPQNTGLNGANDSSKKGNPLRSVEERKEEYDRARARIFNGSASFDSVDTSSMVPIDGKSYVMNKDENETSKIPMADPERCISFRDNSYPRVAIIRDREKDRSDPDYDRSYGRYARSLSASAINLVPFNLPNAQPSFAQYDTTFNQLGQMPQTQASLGYGLPSTPMMSPFVTPALNPTSGDGGYLQWPSPTMMYAHSYDQFRHAVYQAPFGQPLSFDYSQNY 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03117 353 MobiDBLite consensus disorder prediction 130 160 - -
Trre13g03117 353 Gene3D - 13 133 IPR036867 GO:0003676
Trre13g03117 353 PANTHER CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN 19 343 - -
Trre13g03117 353 Pfam SUZ domain 126 173 IPR024771 -
Trre13g03117 353 Pfam R3H domain 37 88 IPR001374 GO:0003676
Trre13g03117 353 ProSiteProfiles SUZ domain profile. 104 174 IPR024771 -
Trre13g03117 353 CDD R3H_encore_like 34 99 - -
Trre13g03117 353 ProSiteProfiles R3H domain profile. 35 99 IPR001374 GO:0003676
Trre13g03117 353 SUPERFAMILY R3H domain 8 122 IPR036867 GO:0003676
Trre13g03117 353 SMART R3H_4 19 100 IPR001374 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03117 Trre-Chr13 37244094 37248910 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03117 - - gmx:100814835 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03117 13 37244094 37248910 Trre13g03117 13 37244094 37248910 ECH