Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g03089 ATGGCAGAGGAGTCGATTTGTTGCAGCAACAGTTTTGAGCTGAGCCCAGATGAAGAAAGGATCATGATTAGAGACATTGCGATTTCTTCTCAAGCTAATACCAAAGAAGGCGACACTTTCTTCATCATCACTCAGAGATGGTGGCAAGATTGGATTGAATATGTGAACCAAGACCAGACAAACCCTTCTTATGATGGATCTTCCTTTCATGAACATAGCGATTTGGCCAGGTCAAGTGCTTTAAAGAGGCCAGCTGATATTGATAATTATGATTTGATAGATAATACTGGACCAGACGACTCTAGTACGGGTATTGAAATTCATGATACACTTCTAGAAGGTCGTGACTATGTATTACTTCCCCAAGAGGTTTGGGACCAATTATTTAAATGGTATGGTGGCGGACCTACATTGGCTAGGAAAGTTATTAGTTCAGGTCTTTCCCAGACAGAATTTGCAGTAGAGGTGTATCCTTTACGGCTTAAATTACTTGTGTTGCCAAAAAATGTACGGTCCACTATAAGAATAAGCAAGAAGGAAACCATTGGACAGTTACACAAGAATGCGTGTGAAATATTTGATCTTCAGTTAGACCAAGTGCGCATTTGGGATTACTATGGCCATCAGAAGCATGCCTTGATGAATGACATGAACAAAACTCTAGATGATGTCAATCTACAAATGGACCAAGATATTCTTGTTGAGGTGGTTAAAATTACAAATAACACAAGTTTTGCTCAAGAAAATGGATCAGCACAGAGGGAAACCAATTCTGTTCTTGTGGGGCCTTTAAAATTTGCCGGTGGCCTGTCTACCAGCAAGGGTGCATCTAGAGGCAACAATATTGAACTTTCTTCATCTCAGAAACTAAATTCTCCTGTCAGAGATTCGGAAAACCCTTATGGAACTCTTGGTGTCACCACAAGAGGTTCATTCGGTGGTGGTCTCACTGGGTTGCTAAATCTTGGCAATACTTGTTTCATGAATAGTGCAATACAGTGCCTTGTTCATACACCAGAATTTGCTAGGTACTTTAGGGAGGACTATCATCAAGAGATAAATTGGCAAAATCCACTTGGCATGGTGGGTGAACTAGCCCTAGCATTCGGTGAGTTGCTTCGAAAACTATGGGCACCTGGGAGAACACCAATTGCTCCTCGGCCTTTTAAAGCAAAGCTTGCTCGCTTTGCACCTCAGTTCAGTGGGCACAACCAACATGATTCTCAGGAGCTTTTAGCATTTCTACTGGATGGTCTCCATGAAGACTTAAATCGTGTAAAGCAGAAACCATATATAAAGTCTCGAGATGCTGATGGCCGACCTGATGAAGAAGTGGCCGATGAGTATTGGGCAAACCATATTGCTCGTAATGATTCCATAATTGTTGATGTGTGTCAGGGACAATACAAGTCGACTTTGGTTTGTCCAGTTTGCAACAAAGTCTCTGTCACATTTGATCCTTTCATGTACCTTTCCCTGCCTCTCCAGTCCGCCACCAATAGGACCATGACAGTGACGGTTTTTAGTTGCGATGGTTCTACCCAGCCATCTCCGTGTACAGTAACTGTGCCCAAGCAGGGACGATGCAAAGATCTTATACAGGCACTTACAAATGCTTGCTCATTGAAGCATAATGAAAGGCTAGTGCTGGCGGAGGTACGGAACCATTTGATCCATAGATTTTATGAAGATCCTCTTCAATTGTTGTCCTCAATCAAAGATGATGACCGTCTTGCCGCATACAAGATTACAAAGATGGACAAAAACACAAAGTACCTGCAGTTGATACATCGCCGCAGAGATAGTGACTCACAGACCATTTCAGGATGGAAACCGTATGGAACACCGTTTGTTTCATTGATCTCATGTGATGATACAATCACAAGAGGTGACATACAAGTAATTGTTAATCGTATACTCTCTCCTCTTCTGTTGAAAGGTGGCAATGCAGCTGCTTCTGCTGAAACCAACGTGGTGTCAAATTCAATACATAAGGATAATACCGTTTCAAAGGTACCAACATTACCTCTACTATTGGTAGATGATAATAATGCTTGTATTGATCTTTCAATGGGAGAGGATAAAGTAGTTAAACTGTCACCGTCATCAGCAAGAGTTCTAGTGTATATTGATTGGTCTCAGAAGCTTTTGGAGAAGTATGATACTCATCCACTTGAGACTTTGCCAGAAGTTTTGAAATATGGGCCGGTAACCAAGAAAGCTCGTACCGAACCTCTCTCGTTGTACACTTGCTTGGAAGCTTTTCTGCGTGAAGAACCTTTGGTACCTGAAGATATGTGGTACTGTCCTAAATGCAAAGAGAGACGACAAGCAAGCAAAAAGCTTGATTTATGGAGGCTCCCAGAAGTTTTGGTAATTCATTTAAAGAGGTTCTCATACAGCAGGTCAATGAAGCATAAACTGGAGACTTTTGTTAACTTTCCCATTCATGATTTTGATTTAACAAATTACATAGCCAACAAAAACAACTCGCAGCGTCAAGTGTATGAACTCTATGCCCTTACGAATCATTATGGTAGTATGGGTAGTGGACATTATACTGCACATATTAAGCTTTTAGACGAAAACAGGTGGTACAATTTTGATGATAGTCACATATCACTCATAAGTGAAGATGAGGTTAATACTGCCGCCGCCTATGTTTTATTTTACCGGAGGGTGAAAACTGACGATGAAATTGTAAGCAATGGGGCTTAG 2718 0.4132 MAEESICCSNSFELSPDEERIMIRDIAISSQANTKEGDTFFIITQRWWQDWIEYVNQDQTNPSYDGSSFHEHSDLARSSALKRPADIDNYDLIDNTGPDDSSTGIEIHDTLLEGRDYVLLPQEVWDQLFKWYGGGPTLARKVISSGLSQTEFAVEVYPLRLKLLVLPKNVRSTIRISKKETIGQLHKNACEIFDLQLDQVRIWDYYGHQKHALMNDMNKTLDDVNLQMDQDILVEVVKITNNTSFAQENGSAQRETNSVLVGPLKFAGGLSTSKGASRGNNIELSSSQKLNSPVRDSENPYGTLGVTTRGSFGGGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFREDYHQEINWQNPLGMVGELALAFGELLRKLWAPGRTPIAPRPFKAKLARFAPQFSGHNQHDSQELLAFLLDGLHEDLNRVKQKPYIKSRDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQSATNRTMTVTVFSCDGSTQPSPCTVTVPKQGRCKDLIQALTNACSLKHNERLVLAEVRNHLIHRFYEDPLQLLSSIKDDDRLAAYKITKMDKNTKYLQLIHRRRDSDSQTISGWKPYGTPFVSLISCDDTITRGDIQVIVNRILSPLLLKGGNAAASAETNVVSNSIHKDNTVSKVPTLPLLLVDDNNACIDLSMGEDKVVKLSPSSARVLVYIDWSQKLLEKYDTHPLETLPEVLKYGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPKCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTNYIANKNNSQRQVYELYALTNHYGSMGSGHYTAHIKLLDENRWYNFDDSHISLISEDEVNTAAAYVLFYRRVKTDDEIVSNGA 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g03089 905 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 318 333 IPR018200 GO:0004843|GO:0006511
Trre13g03089 905 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 836 853 IPR018200 GO:0004843|GO:0006511
Trre13g03089 905 ProSiteProfiles DUSP domain profile. 14 143 IPR006615 GO:0004843
Trre13g03089 905 MobiDBLite consensus disorder prediction 272 302 - -
Trre13g03089 905 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 254 893 - -
Trre13g03089 905 Gene3D Cysteine proteinases 307 551 - -
Trre13g03089 905 CDD Peptidase_C19R 739 892 - -
Trre13g03089 905 Gene3D Cysteine proteinases 713 901 - -
Trre13g03089 905 SMART dusp 33 146 IPR006615 GO:0004843
Trre13g03089 905 MobiDBLite consensus disorder prediction 273 302 - -
Trre13g03089 905 SUPERFAMILY Cysteine proteinases 315 894 IPR038765 -
Trre13g03089 905 Gene3D - 9 156 IPR035927 -
Trre13g03089 905 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 317 894 IPR028889 -
Trre13g03089 905 Gene3D - 157 242 - -
Trre13g03089 905 Pfam DUSP domain 37 143 IPR006615 GO:0004843
Trre13g03089 905 Pfam Ubiquitin carboxyl-terminal hydrolase 317 891 IPR001394 GO:0004843|GO:0016579
Trre13g03089 905 SUPERFAMILY DUSP-like 15 143 IPR035927 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g03089 Trre-Chr13 36785974 36795100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g03089 747 896 Miscellaneous Gene Families AT4G31670 34.641 2.19e-17 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g03089 - - mtr:11408935 1649.8