Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02935 ATGGCCACCGTCCTCCAAACTCCCACATTCCGGCCATCCCTAACGCTACTCACCACCGCCGCCACATCATCCAATCACCCCAAAACCTCTAGGGTTTCTATTACATCCTCCAGAAGGAAACCGTCACCACTTAAATCCCTCCGGTTCCCTTCAATTCCCTCCGTTCGGTTCGTCAAGTTAGTACCCTTTGCTTTCGACGGAGATACCGAGGCTCCTCAAGTTCAAGAACAACCTGAGGTTCAGGTTCTGGATTCTTCAGATGGTGCTGTTGCTGTGGAGGATAGTACAGGTGATGATGAGGTCAGCGATGCTGGGGAAATACCTTCTTCACCTTTGCTAGTATTACTGCAGTCTTACAAAGAAGCATTAGTTAATAATGATGAAACCAAAGTTGCCGAGTTGGAATCATCATTAAAATCCATTGATGACGAGATAGCAGGTCTCGAAGGGAAAATAGCTTCTTTATCTGAAGAATTATCAATAGAGAAAGATCGGAAACTAAGGATTGGTGCAGACTTTGACAATTATCGGAAGAGGAACGAGAGAGATCGCCTTTCATTGGTCACGAATGCTCAGGGGGAAGTTGTGGAGAGTTTGTTGCCTGTATTGGATAATTTTGAGAGAGCAAAAGCTCAGATTAAGGTGGAAACAGAGGGAGAGGAGAAAATTAACAATAGCTATCAAAGCATATACAAGCAGTTCATTGAAATTCTAAACTCACTAGGAGTTGAGCCAGTGGAGACGGTTGGAAACCCCTTTGATCCAATGCTACATGAAGCAATTATGCGTGAGGATTCTGCTGAGTTTGAAGAAGGCATCATACTTCAAGAATTCAGAAAAGGTTTTAAAATTGGTGACCGCCTCTTACGTCCATCAATGGTGAAGGTATCAGCTGGTCCAGGACCAGCAAAGCTGGAACAAGCATCACAGGAAGAACAAGTCACAAATGAAATTTCCGAGGATAGTAAAGAGAATGATCGTAACACAGAAACAGAGTCTGCTTGA 1005 0.4398 MATVLQTPTFRPSLTLLTTAATSSNHPKTSRVSITSSRRKPSPLKSLRFPSIPSVRFVKLVPFAFDGDTEAPQVQEQPEVQVLDSSDGAVAVEDSTGDDEVSDAGEIPSSPLLVLLQSYKEALVNNDETKVAELESSLKSIDDEIAGLEGKIASLSEELSIEKDRKLRIGADFDNYRKRNERDRLSLVTNAQGEVVESLLPVLDNFERAKAQIKVETEGEEKINNSYQSIYKQFIEILNSLGVEPVETVGNPFDPMLHEAIMREDSAEFEEGIILQEFRKGFKIGDRLLRPSMVKVSAGPGPAKLEQASQEEQVTNEISEDSKENDRNTETESA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02935 334 ProSitePatterns grpE protein signature. 253 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Trre13g02935 334 MobiDBLite consensus disorder prediction 21 42 - -
Trre13g02935 334 MobiDBLite consensus disorder prediction 295 334 - -
Trre13g02935 334 Hamap Protein GrpE [grpE]. 75 298 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Trre13g02935 334 FunFam GrpE protein homolog 124 240 - -
Trre13g02935 334 Gene3D Head domain of nucleotide exchange factor GrpE 242 297 IPR009012 GO:0006457
Trre13g02935 334 Pfam GrpE 136 297 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Trre13g02935 334 PRINTS GrpE protein signature 250 265 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Trre13g02935 334 PRINTS GrpE protein signature 167 183 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Trre13g02935 334 PRINTS GrpE protein signature 195 210 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Trre13g02935 334 PRINTS GrpE protein signature 277 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Trre13g02935 334 FunFam Protein GrpE 242 297 - -
Trre13g02935 334 CDD GrpE 163 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Trre13g02935 334 PANTHER GRPE PROTEIN 19 298 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Trre13g02935 334 MobiDBLite consensus disorder prediction 316 334 - -
Trre13g02935 334 Gene3D - 125 240 IPR013805 -
Trre13g02935 334 MobiDBLite consensus disorder prediction 21 45 - -
Trre13g02935 334 Coils Coil 124 165 - -
Trre13g02935 334 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 243 299 IPR009012 GO:0006457
Trre13g02935 334 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 144 242 IPR013805 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02935 Trre-Chr13 29533673 29537217 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02935 K03687 - gmx:100820521 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02935 13 29533673 29537217 Trre13g02935 13 29533673 29537217 ECH