Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02933 ATGGAATCAAGCGTTCTCGAATGCATCGGCGTAGAGATAATCGGAGTAATGTCACCGGTATCAATCTGCATGTTCCTCGTCGTTCTCCTCGTTTACTCCCTCTCCACTTCCTCCTCCCCTGAAACCACCATCACCACCGCCGCAAATCTCGTCTACGCCGAAAACCCCTCCGACACCACCGCACAAAAACTCGAAGGCGCACTTCTAAACGCCGTCGTTTTCGTCATCCTAATCGCAATCGTCACATTCCTTCTTGTCCTCCTTTACTACTACAACTGCACTTCCTTCCTCCGTAACTACGTTCGTTTCTCCGCTTTCTTCGTTCTCGCTTCTATGGGCGGATCCATTTTCCTTTCACTCATTCAACGTTTCTCTATTCCTTTAGATTCAATCACTTGTTTCATTCTTCTCTTCAATTTCACAATTATCGGTGTTCTTTCAATCTTCGCTTCTGCTATTCCGATTATTCTCCGTCAGTGTTATATGGTTTGTCTTGGTATCATCGTTGCCGCGTGGTTCACCAAGCTTCCTGAATGGACCACGTGGACGCTTCTTGTTGCTCTTGCTGTTTACGATCTTGTCGCCGTTTTAGCTCCCGGTGGTCCGTTGAAGCTTCTCGTTGAATTAGCTTCTAGCCGGAACGAGGAGCTTCCTGCTCTTATCTATGAAGCTCGCCCTACCGTTGCCCCAACCGGTAGGGCTGCTGCTTTAGGGTTTTTGGTCGCCGGAGTCGCCGAATCAGAATCATCGTCAATTGAGCTTCAGGTAGTCCCCACTGAGAATCAGAGTAACAGTAATAGTAATACTCATGGTGGTAATGGTAGTGGTGGTGGTGGTGATTCTGTGGCTGTTGTTAGGGTTGGGGATTTTATAAATGATGAAGGGGAAAGATCACCATTGGTAGGTAATGCGAATCGCGACGAGGAAAGGTCACCACTTGTTGAGGTGATGGGGAATGAGAGAGAAATAGGGACAATGAGGAGGGAAGTTGAGGAAGTTGCTGAGAGAGGGATTAAGCTTGGACTTGGTGATTTTGTTTTCTACAGTGTTCTTGTGGGTAGAGCTGCAATGTATGATCTCATGACTGTTTATGCTTGTTACCTTGCAATTATATCTGGACTTGGTTGCACTCTTATTTTGTTGTCGGTTTGTCGTCATGCTTTGCCTGCTCTTCCGATTTCGATTGCCTTGGGTGTGCTTTTCTATTTCTTGACTAGATTGTTAATGGAACCTTTTATTGTTGGAACTGCTACAAATTTGATGATGTTTTGA 1272 0.4591 MESSVLECIGVEIIGVMSPVSICMFLVVLLVYSLSTSSSPETTITTAANLVYAENPSDTTAQKLEGALLNAVVFVILIAIVTFLLVLLYYYNCTSFLRNYVRFSAFFVLASMGGSIFLSLIQRFSIPLDSITCFILLFNFTIIGVLSIFASAIPIILRQCYMVCLGIIVAAWFTKLPEWTTWTLLVALAVYDLVAVLAPGGPLKLLVELASSRNEELPALIYEARPTVAPTGRAAALGFLVAGVAESESSSIELQVVPTENQSNSNSNTHGGNGSGGGGDSVAVVRVGDFINDEGERSPLVGNANRDEERSPLVEVMGNEREIGTMRREVEEVAERGIKLGLGDFVFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRHALPALPISIALGVLFYFLTRLLMEPFIVGTATNLMMF 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02933 423 Gene3D Presenilin 315 414 IPR042524 -
Trre13g02933 423 FunFam Presenilin 316 414 - -
Trre13g02933 423 PANTHER PRESENILIN 2 423 IPR001108 GO:0004190|GO:0016020|GO:0016485
Trre13g02933 423 SMART psh_8 65 409 IPR006639 GO:0004190|GO:0016020
Trre13g02933 423 MobiDBLite consensus disorder prediction 256 275 - -
Trre13g02933 423 PRINTS Presenilin family signature 192 209 IPR001108 GO:0004190|GO:0016020|GO:0016485
Trre13g02933 423 PRINTS Presenilin family signature 17 27 IPR001108 GO:0004190|GO:0016020|GO:0016485
Trre13g02933 423 PRINTS Presenilin family signature 175 182 IPR001108 GO:0004190|GO:0016020|GO:0016485
Trre13g02933 423 Pfam Presenilin 11 413 IPR001108 GO:0004190|GO:0016020|GO:0016485
Trre13g02933 423 MobiDBLite consensus disorder prediction 256 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02933 Trre-Chr13 29234540 29235811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02933 1 423 Miscellaneous Gene Families AT1G08700 64.565 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02933 K04505 - gmx:100819461 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02933 13 29234540 29235811 Trre13g02933 13 29234540 29235811 ECH