Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02921 ATGATAATGGCGCTATCATTTTCTTCACCAACATCATCATATTCATGCTTTTCACCTTCTACAACATTTCTTCCTCATTCGCCTCATATTACTACTCAATTCCACCGTAACATCAAACCCTACATCCGTTTCCGCCGAACAATTTCCGCCACCGCCACCGTCTCCTCTACTTCTTCAACTCCGTCATTCCACTCTACCACCAGAGAAGGACTTGACGCCGTCAACATTGCTGAAGATGTCACTCAGTTGATTGGGAATACACCGATGGTATATCTGAATAAAGTTACAGAAGGATGTGTAGCAAAAGTTGCTGCAAAACTTGAGTCCATGGAGCCATGCCGAAGTGTCAAAGACAGAATTGGCTATAGTATGTTGGCAGATGCCGAAGAGAATGGAGCAATTATTCCGGGGAAGACTGTTTTAGTTGAACCCACAACTGGAAATACAGGACTTGGCCTTGCTTTTGTTGCGGCAACTAAGGGGTATAAATTGATAGTCACAATGCCTGCTTCTGTTAATATTGAGAGGAGAATCCTTTTACGCACATTTGGTGCAGAGGTTATTTTGACTAATGCAGAGAAAGGGCTGAAAGGGGCTGTTGACAAAGCTGAAGAAATTGTCAACGCCACGCCCAACGCTTACATGTTTCGACAGTTTGATAACAGAAATAATACCAAGATCCACTTCGAAACTACAGGGCCAGAGATATGGGAGGATACCGTGGGTAATGTTGATATATTGGTTGCTTCTATTGGAACTGGCGGCACTATTACAGGCACAGGAGATTATCTGAAATTGATGAACAAAAAAATACAGGTGGTTGGGGTGGAACCTGCAGACAGAAGTATAATCTCAGGAGACAATCCAGGTTACATACCAAGCATTTTGGATATCAAACTGCTTGATGAGGTTGTCAAGGTTACCAATGTTGAAGCTATTGAAATGGCAAGGAGATTAGCATTGGAAGAAGGATTGCTGGTTGGGATTTCTTCAGGAGCTGCAGCAGCAGCTGCCATAACTTTAGCAAGACGGCCCAAAAATTCCGGAAAACTTATAGCAGTTATTTTTCCTAGTTTTGGTGAGAGGTATCTTACCACTGCCCTCTTCAATTCTATCTATGAAGAGGTTCAGCAAATGTAA 1140 0.4272 MIMALSFSSPTSSYSCFSPSTTFLPHSPHITTQFHRNIKPYIRFRRTISATATVSSTSSTPSFHSTTREGLDAVNIAEDVTQLIGNTPMVYLNKVTEGCVAKVAAKLESMEPCRSVKDRIGYSMLADAEENGAIIPGKTVLVEPTTGNTGLGLAFVAATKGYKLIVTMPASVNIERRILLRTFGAEVILTNAEKGLKGAVDKAEEIVNATPNAYMFRQFDNRNNTKIHFETTGPEIWEDTVGNVDILVASIGTGGTITGTGDYLKLMNKKIQVVGVEPADRSIISGDNPGYIPSILDIKLLDEVVKVTNVEAIEMARRLALEEGLLVGISSGAAAAAAITLARRPKNSGKLIAVIFPSFGERYLTTALFNSIYEEVQQM 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02921 379 NCBIfam cysteine synthase 81 369 IPR005856 GO:0004124|GO:0006535
Trre13g02921 379 Pfam Pyridoxal-phosphate dependent enzyme 80 356 IPR001926 -
Trre13g02921 379 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 76 372 IPR036052 -
Trre13g02921 379 Gene3D - 118 220 IPR036052 -
Trre13g02921 379 FunFam Cysteine synthase 111 188 - -
Trre13g02921 379 CDD CBS_like 85 365 - -
Trre13g02921 379 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 106 124 IPR001216 GO:0006535
Trre13g02921 379 FunFam Cysteine synthase 189 365 - -
Trre13g02921 379 PANTHER CYSTATHIONINE BETA-SYNTHASE 76 375 - -
Trre13g02921 379 NCBIfam cysteine synthase A 81 369 IPR005859 GO:0004124|GO:0006535
Trre13g02921 379 Gene3D - 82 364 IPR036052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02921 Trre-Chr13 29092311 29097061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02921 72 379 Miscellaneous Gene Families AT3G03630 78.896 1.76e-168 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02921 K22846 - gmx:100819100 540.036