Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02918 ATGTTCCTAGCAGTTTCCTCCTCACCAAAAAAATGGATGAGAAATTGTGTTGGAGTGCTCAACTCATTCATATGTTACCTTGTTTTCCTCATCTTTGATCTTCTTGATGCTGTTTTATGCATTATCTATAGATACCTTGATGAGTGCGTTGAAGGGGTAGCCTCTCCATGTTGTTGTTCTAAATGGGAGAGACAGAAGAAGATTATGATGAATGATGAAGATGATTGTCTTTCAGATAGTTTGTATGAGAGGAAGAGCTTGTTTAGAGAAATGGGTTTGCTTCAATTTGGAAGAAAAAGGGAAGATTCCAATGGAAAATGTGGTGGCAGCAGGAAAGTGAATTGTTGGTCTGATTGTGGGTGTGAGTCTTGTCTTTCATGGGTGAATGGTAGTGATGACTATAAACTTCATTTTGTTGTTAAGGAACCTTTATTAGCCACCAGTGAAAACTGCAGGGGAGACCCTTATGAGAATGTGATATTCTTGCATGGATTTATGTGTTCTTCCTCATTTTGGACTCAGACATTGTTTCCATGTTTCTCTGAAAATGTAAATCATGACTACAGATTAATTGCCATAGACCTATTGGGATTTGGCAAGAGTCCAAAGCCAAGAGATTGTTTGTATACTTTGAAGGATCATGTAGAAATGATTGAGAAATCTGTGATTCAACCATTGCATTTAGGTACTTTTCATCTGGTTGCACACTCTATGGGGAGTGTAATTGCATTGGCTTTGGCTGCAAAGTACCACAACTGTGTCAAATCAATCACTCTTGTTGCACCTCCATACTCTTCTTCTGAGGGAAATGATGCTTGTTTGAATGCACTTGAAAACTTTGCTGGAAAGAAATTGTGGCCAATGTTATCAGCTGGTTCTTCATTTATGTCATGGTATGAGCATTTAGGTCGAACTGTTTGTCTTGTCTATTGCAGAAATCACAGGATATGGGAAAGGATTCTAAAATTCATTACTCGAAAGAGGGATCTGAATTTCTTGATCACAGACATGACTAGACATACTCATCAATCTGCTTGGAGTTCCATGCATAATGTGATATGTGGTGGAGCAAAATTCATGGATAGTTACTTGAAAATTTTGACAAAAAGTGGAGTTAGAATAAATGTTATACAAGGTGATAAAGATCAAGTTGTCCCAAGGGAATGCATTAGTAAATTCAAGTTGAAGGCTCCACATGCTGAAATTAACATAATTCCAAATGCAGATCATAGCACTGTGCTATTAGGCAGAGAGAAGAAATTTGCACAAAATTTGGAGCATACATGGGCATCTTGCTAA 1299 0.3772 MFLAVSSSPKKWMRNCVGVLNSFICYLVFLIFDLLDAVLCIIYRYLDECVEGVASPCCCSKWERQKKIMMNDEDDCLSDSLYERKSLFREMGLLQFGRKREDSNGKCGGSRKVNCWSDCGCESCLSWVNGSDDYKLHFVVKEPLLATSENCRGDPYENVIFLHGFMCSSSFWTQTLFPCFSENVNHDYRLIAIDLLGFGKSPKPRDCLYTLKDHVEMIEKSVIQPLHLGTFHLVAHSMGSVIALALAAKYHNCVKSITLVAPPYSSSEGNDACLNALENFAGKKLWPMLSAGSSFMSWYEHLGRTVCLVYCRNHRIWERILKFITRKRDLNFLITDMTRHTHQSAWSSMHNVICGGAKFMDSYLKILTKSGVRINVIQGDKDQVVPRECISKFKLKAPHAEINIIPNADHSTVLLGREKKFAQNLEHTWASC 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02918 432 Gene3D alpha/beta hydrolase 128 431 IPR029058 -
Trre13g02918 432 PRINTS Alpha/beta hydrolase fold signature 187 202 IPR000073 -
Trre13g02918 432 PRINTS Alpha/beta hydrolase fold signature 247 260 IPR000073 -
Trre13g02918 432 PRINTS Alpha/beta hydrolase fold signature 233 246 IPR000073 -
Trre13g02918 432 PANTHER HYDROLASE 133 424 - -
Trre13g02918 432 SUPERFAMILY alpha/beta-Hydrolases 127 424 IPR029058 -
Trre13g02918 432 Pfam alpha/beta hydrolase fold 159 279 IPR000073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02918 Trre-Chr13 29076602 29078695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02918 19 432 Acyl Lipid Metabolism Gene Families AT5G17780 49.165 1.40e-143 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02918 - - gmx:100775258 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02918 13 29076602 29078695 Trre13g02918 13 29076602 29078695 ECH