Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02917 ATGGGCAGCGCCGCCCCAAGGTTCCTTTTCATCCTCCGTCACAACCTCCGCCTCCTCTCTCCCTCTTTCTCTTCTCATTTCCACCACCAGCGCGCTCTATTTTCCTCATTCACTTGTTCTCCTTCTTTCACACCAAAACTTAAACTCAAACTCAAAGCCTCACAACAACAACACATTCACACCCAACCTTTATCATCTTCCCTCGGTGGGACCCATCCATGGCCCGAGTTTTCCAGATTTCTCTCTCACATCTCCTCTGCCGGCTACACTTCCACTATTCCTCCCGCCAATACTTATACTCACACCGGTGAATTGTCCCAGGCCGATGTCAGTGCCTGCTTGACCTTCGCTCGAGATAGACCTAACCTTCTTAGGTTACTTTCGATGAGAGATATTGCAGTTGTGGTTGAACATGGAACCCCTTTTATGTTCTCAGACTCTGATGATTCTGTTCGGAAGATGAAGTCTTTTGTATCCAACGGTGATTCAACTGCCTTGGACACTGATAAAGCAACTATGGTTGATCTAATGAAATTTATGCTGAGTTATGCAAGTAACTGCTCGGTCTCTTCAGAAAGGAACAGTCTCTATAACAAAAATCTTGTTGAATCATCAGTCAGAAACCTATTTGGTGAACTTTTCAAGCTGAGTTATAGTGCACCTGGACCTAACTCTTTTGATTCAGAGCAAAATCAAATTCCCAGTGGTAGATTTGGGTGTACAATACCTCCTGGACAAAATATTGAAATGAAAAGGGGTGATTGGATTTGCCCAAGGTGTAATTTCATGAATTTTGCAAGAAATATCAAATGTCTTGAATGTGAGGAAGCAAGGCCAAAAAGACAACTGACTGGTGGAGAATGGGAATGTCCTCAGTGTGATTTCCATAATTATGGGAGGAATGTAGTTTGCTTAAGGTGTGATTGCAAGCAGCCTGGACAAATATCTTTGGGTGCCACCAATACCACATCACATCCAGGGTATGGAAATGGAGACAATTCTAATGCTTCAGATATTGATGCTAGGTTAGTGGCTAATGAAGAAAAGGCACAACGTTGGTTTAACAAGGTTTCTCAACTAGACAGCAATTCTGATATTAACAGTGTGGTAGACGATGAAGATTTTCCGGAAATAATGCCTTTAAGGAAAGGGGTTAATAGATTTGTTGTGAGCACAAGGAAAACTCCATTGGAAAATAGGTTGAACAATGCTCAATTCAAGAGAAATTTGGGAAATAATGACACTCCTGGAGTTGAGAATTTAACAGCTTGGGAGTCAGCCAAGTCCCATGATACTCTAGATGACATTCTAGGTCGTTCAACTGGACTTCCTCAATCTGATTATAAAAACATGGGTGCTGAACCAAATTTCAGTGGCGAAAGGTTACCTTCAATTGCTAGCAACACTTCACATTTCAAAGATGTGAAAGGGAAAAACACTTCTTCTCTTCCCCCCTTTCCATCATACGCCAGTTCTGGTGACACAGACAGTACAGAACTTTCTAATAACTCTACCAGTGAAAATGTCATCGGGGATAAGGAGAAAGAGCAAACTGAAAAATCTGAGAGATGGTTTAAAAAGATTGCAGAGCTGAATGATGTTCCAGATATAACTAGTGCAATATCTGATGATGATTTCCCTGAAATAATGCCGCTGCGTAAAGGAGAAAACCGATTTGTTGTAAGCAAGAAAAAAGACCGGTCCTTGACGACACCAGCATATAAGAGACGTTTGGCCATGGAGCAATCTGGCAATACCAACTTTGTCCCCTTTGTACCCTTCCCCCCAGATTACTTTGCCAAAAAGGACAAGCCACAGGCAGATGGGACAGATTCGACAAATAGGTCCAATGTTGAATCATCCTCAATAACTGAAGTCACTGAGATGTCAAGTGATGCTAGATTTAGACCGGAACAGAGTCCAGAACCTTCTAATCAGAGCTCAAGTAACAACAATCATGTTGGTTCTACTTATGCTGCTACAAGCAGTGGAAATTCAAGTCAGGGTTTCAATCAAGATCATGTGCCAAATTTGAAAGAGAGTTCATCCACAAGTTCAGCATCTGAGAACCAGAGTGTTGGAACAGAATGGACAGGGAAGAGTTTAGAGGGGTCGGCAGTCAGGGAACCAGATCCTTTGGACATGTCAGAGGAGGCAAAGGCAGAGAGGTGGTTCCGTCGCGTTACGCAGATTAAGGATATCTCTGAACTCAGTCAGATTCCAGACGAAGATTTTCCTTCAATAATGCCTATGCGTAAAGGGGTGAACAGATTTGTTGTGAGCAAGAGGAAAACACCATTGGAAAGGAGATTGACGTCTCAGCAGTACCGAAGAAATCTTCCAGTTGTGAGCTCAGATCCTGTTAAAAGAGAAAATGAAGGTAGCTGA 2388 0.4259 MGSAAPRFLFILRHNLRLLSPSFSSHFHHQRALFSSFTCSPSFTPKLKLKLKASQQQHIHTQPLSSSLGGTHPWPEFSRFLSHISSAGYTSTIPPANTYTHTGELSQADVSACLTFARDRPNLLRLLSMRDIAVVVEHGTPFMFSDSDDSVRKMKSFVSNGDSTALDTDKATMVDLMKFMLSYASNCSVSSERNSLYNKNLVESSVRNLFGELFKLSYSAPGPNSFDSEQNQIPSGRFGCTIPPGQNIEMKRGDWICPRCNFMNFARNIKCLECEEARPKRQLTGGEWECPQCDFHNYGRNVVCLRCDCKQPGQISLGATNTTSHPGYGNGDNSNASDIDARLVANEEKAQRWFNKVSQLDSNSDINSVVDDEDFPEIMPLRKGVNRFVVSTRKTPLENRLNNAQFKRNLGNNDTPGVENLTAWESAKSHDTLDDILGRSTGLPQSDYKNMGAEPNFSGERLPSIASNTSHFKDVKGKNTSSLPPFPSYASSGDTDSTELSNNSTSENVIGDKEKEQTEKSERWFKKIAELNDVPDITSAISDDDFPEIMPLRKGENRFVVSKKKDRSLTTPAYKRRLAMEQSGNTNFVPFVPFPPDYFAKKDKPQADGTDSTNRSNVESSSITEVTEMSSDARFRPEQSPEPSNQSSSNNNHVGSTYAATSSGNSSQGFNQDHVPNLKESSSTSSASENQSVGTEWTGKSLEGSAVREPDPLDMSEEAKAERWFRRVTQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQQYRRNLPVVSSDPVKRENEGS 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02917 795 Pfam Zn-finger in Ran binding protein and others 252 279 IPR001876 -
Trre13g02917 795 Pfam Zn-finger in Ran binding protein and others 286 308 IPR001876 -
Trre13g02917 795 MobiDBLite consensus disorder prediction 582 715 - -
Trre13g02917 795 MobiDBLite consensus disorder prediction 766 795 - -
Trre13g02917 795 MobiDBLite consensus disorder prediction 461 508 - -
Trre13g02917 795 ProSitePatterns Zinc finger RanBP2-type signature. 255 274 IPR001876 -
Trre13g02917 795 Gene3D - 244 281 - -
Trre13g02917 795 Gene3D - 282 314 - -
Trre13g02917 795 MobiDBLite consensus disorder prediction 610 699 - -
Trre13g02917 795 MobiDBLite consensus disorder prediction 434 518 - -
Trre13g02917 795 ProSitePatterns Zinc finger RanBP2-type signature. 288 307 IPR001876 -
Trre13g02917 795 ProSiteProfiles Zinc finger RanBP2 type profile. 284 313 IPR001876 -
Trre13g02917 795 SMART zf_4 253 277 IPR001876 -
Trre13g02917 795 SMART zf_4 286 310 IPR001876 -
Trre13g02917 795 ProSiteProfiles Zinc finger RanBP2 type profile. 251 280 IPR001876 -
Trre13g02917 795 SUPERFAMILY Ran binding protein zinc finger-like 246 280 IPR036443 -
Trre13g02917 795 PANTHER ZINC FINGER PROTEIN 50 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02917 Trre-Chr13 29065997 29072890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02917 71 317 EF-hand Containing Proteins AT1G55040 32.000 7.66e-36 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02917 - - mtr:25498993 1060.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02917 13 29065997 29072890 Trre13g02917 13 29065997 29072890 ECH