Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02916 ATGGTCTCCAAGCTGCTTTTGCAGAGAAGGCTCTTCAGGTTCTTGCAACTGTCACCCTACTCGTTATGCTCCTTTTCTTCTTCATCTTCCCTTCATGGGTCTCCATTTCATTCTGTGAAAGCAACAGAAATCTTGAATCCGTTAACTTCTTCTAGAAGCTTCTGCTCTCGGAAGTCCAATCTTGTTGATGAATTTCATGGTCCCGCACCTATTGATTACAGTTCTCTGCTGCAGGAGGGTGATTTCCATAGATTGGCTGATTCCACAATACACAGCCTTCAAGAGAAATTTGAGGATTATGGAGACTCAGTTGACCTTGATGGATTTGACATAGACTATGGGAATGATGTTTTGACTGTCAAACTTGGGGAGCTGGGCACCTATGTACTGAATAAACAAACACCAAATAGACAACTTTGGCTGTCTTCGCCAGTGAGTGGTCCGTCTAGGTTTGATTGGGATCAGGATACTAAAGCTTGGATTTATAGGCGGAACAAAGCAAAATTATATAAAATTTTAGAAGATGAGTTGGAGCAGCTGTGTGGCAAACCTATTGTTCTTTCTTGA 567 0.4198 MVSKLLLQRRLFRFLQLSPYSLCSFSSSSSLHGSPFHSVKATEILNPLTSSRSFCSRKSNLVDEFHGPAPIDYSSLLQEGDFHRLADSTIHSLQEKFEDYGDSVDLDGFDIDYGNDVLTVKLGELGTYVLNKQTPNRQLWLSSPVSGPSRFDWDQDTKAWIYRRNKAKLYKILEDELEQLCGKPIVLS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02916 188 PANTHER FRATAXIN 46 187 IPR002908 GO:0008199|GO:0016226
Trre13g02916 188 ProSitePatterns Frataxin family signature. 129 143 IPR020895 -
Trre13g02916 188 NCBIfam iron donor protein CyaY 79 186 IPR002908 GO:0008199|GO:0016226
Trre13g02916 188 Pfam Frataxin-like domain 78 184 IPR002908 GO:0008199|GO:0016226
Trre13g02916 188 FunFam Frataxin, mitochondrial 70 188 - -
Trre13g02916 188 SUPERFAMILY Frataxin/Nqo15-like 69 185 IPR036524 GO:0008199|GO:0016226
Trre13g02916 188 CDD Frataxin 77 185 - -
Trre13g02916 188 ProSiteProfiles Frataxin family profile. 77 185 IPR002908 GO:0008199|GO:0016226
Trre13g02916 188 SMART Frataxin_Cyay_2 77 188 IPR002908 GO:0008199|GO:0016226
Trre13g02916 188 PRINTS Frataxin signature 130 145 IPR002908 GO:0008199|GO:0016226
Trre13g02916 188 PRINTS Frataxin signature 115 130 IPR002908 GO:0008199|GO:0016226
Trre13g02916 188 PRINTS Frataxin signature 77 95 IPR002908 GO:0008199|GO:0016226
Trre13g02916 188 NCBIfam frataxin 82 178 IPR017789 GO:0004322|GO:0005739|GO:0006879|GO:0018283
Trre13g02916 188 Gene3D Frataxin/CyaY 71 188 IPR036524 GO:0008199|GO:0016226
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02916 Trre-Chr13 29059928 29063479 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02916 K19054 - gmx:100815916 273.863