Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02859 ATGTTAGCATGTAGCACTTTACATGGACCTTCCACATTCCACCGCCATTCTCAACCTTCTAAATTCATACTCTCCAAGCCTCTCCTCTTCCCTCCCCGTTCTCACTTCGCAGCGTTCGGGAATTTAAAGTTCCGTTCTATGTTTTCCAGTAAAAACCGCCGTCACAGTTTCAGTGTTAAAGCTTCTCTTGACTCATCATCTGAGGTTTTAGAGTCAATTGATGTTGGTGGCCCGCACATTGGACCACAACGGTATTCCGTCAAGATTCCCGTTGGTGATAGACATATTTTGGTTGAGACTGGTCATATGGGAAGGCAAGCAAGTGGTTCTGTTACTGTTACAGATGGAGAGACTGTTTTGTACACCACTGTTTGTTTGTCTGATATTCCTAGCGAGCCATCCGATTTTTTCCCTCTTTCTGTGAATTATCAAGAGCGCTTTTCAGCTGCTGGTCGCACTAGCGGTGGTTTTTTCAAACGAGAAGGAAAGACAAAGGATCATGAGGTTCTTATTTGTAGATTAATTGATAGGCCTCTGCGCCCTACTATGCCTAAGGGCTTCTACCACGAAACTCAAATATTATCTTGGGTTTTAAGCTATGATGGAATACATATCCCCGATTCCTTGGCTGTCACTGCAGCTGGCATAGCACTTGCACTTTCAGAAGTGCCTATGTCAAAAGCAGTTGCTGGAGTTCGAGTTGGCCTCGTTGGTGATAAGTATATAGTAAATCCTACAAATGAGGAGATGGAAAACTCTGAGTTGGACCTCATGCTGGCTGGCACAGATAGTGCAATACTGATGATAGAGGGTTATGGGAATTTTCTTCTAGAAGAGAAGCTACTTAAAGCTGTAGAAGTTGGTCAGGATGCAGTGCGAGCAATCTGTAATGAGGTAGAAGCCTTGGTCAAGAAATGTGGGAAGCCAAAGATGATTGATGCCATCAAGTTGCCTCCTCCTGAGCTTTATAAACATGTTGAAGAAATTGCTGGTGAAGAGTTGGTAAAAGCTCTTCAAATTAGAAACAAAATACCAAGAAGGAAAGCCCTTTCATCATTAGAAGAAAAGGTTCTTAAGATACTTACAGAAAATGGGTTTGTCACAAATGATTTAGCACCAAGGAGTAATGCTGAAACCATCACAGAGATTCTTGAGGATGAGGATGAAGATGAGGAAGTAATTGTTGATGGTGAAGTTGATGAAGGTGATGTTCATATAAAGCCCACTCCACGCAAACCAACACCTTTATTTTCTGAGGTAGATGTGAAGTTGGTATTTAAAGAAGTTACTTCCATGTTTTGGAGGAAACGTATAGTGGAGGGAGGGAAAAGGAGCGATGGGAGAACACCACACGAAATCCGACCAATTAACTCAAGTTGTGGCCTATTACCTAGAGCACATGGAAGTGCTCTTTTTACGAGGGGCGAGACACAGTCGCTAGCTGTTGCTACACTTGGAGATAACAAGATGGCACAACGTGTAGACAATCTTATAGGTGTTGATGATTACAAGAAGTTCTATCTGCAGTATTCGTTTCCTCCCTCCTGCGTTGGGGAGGTTGGCCGGATTGGTGCACCGAGTAGAAGAGAAATTGGTCACGGGATGCTTGCTGAGAGATCCCTTGAAACAATTTTGCCTTCTGATGGTGATTTCCCTTACACTATTCGTGTTGAGAGTACTATCACAGAAAGCAATGGTTCTTCAAGCATGGCATCTGTTTGCGGTGGTTGCTTAGCATTGCAAGATGCTGGGGTTCCTATTAAATGCTCCATTGCTGGAATTGCAATGGGTTTGGTTCTTGATACCAAAGAATTTGGTGGAGATGGAACTCCACTTATTCTCTCTGACATAACTGGATCTGAAGATGCATCTGGAGATATGGATTTTAAGGTTGCTGGGAATGAAGATGGCATAACTGCATTTCAGATGGACATTAAGGTGGGTGGAATTACTTTGCCCATCATGGAAGAAGCACTGCTACAGGCAAGAGAGGGCAGGAAACATATACTTGGAGAAATGATGAAATGCTCGCCCCCTCCAGCAAAAAGGCTTTCCAAGTATGCTCCTCTGATTCACATTATGAAGGTTAGAGCGGATAAAATAAATCTTATAATCGGTTCCGGTGGGAAAAAAGTGAAGAGCATTATTGAGCAATCTGGAATAGAGGCTATTGATGCTGAAGATGATGGCACTGTGAAAATATTTGCAAAAGATTTGGCTAGTTTAGAGAAGTCTAAGGCTATGATTAGTAATCTGACAATGGTTCCAAATATTGGTGATATATATAGGAATTGTGAAATAAAATCAATAGTTCCATTTGGAGTTTTTGTAGAGATAGCACCTGGACGAGAGGGACTTTGCCATATTAGTGAACTAAGTTCAGGTTGGCTAGCTAAGCCAGAAGATGCTTTCAAGGTGGGCGATCGTATTGATGTAAAACTTAAAGAGATAAATGAAAAGGGACAGTTGCGTCTAAGTCACCGAGCAATGCTTCCTGATGCAGATTCAGACAATTCAAGTGATAAGGGTTCATTGGAAGAAGTTACCAGCTTGACAACTGAAAAGCCAAATGATAAGGTTAACACACCTAAAGGCACAGCCTCATCTAAAAGAAGTTCAGAAGACAATTCTATACTTCCATCAAAAAAGTTTATCAGGAGATCGGTAAACCCTTCCCAGGAGAAGCCAGTCTCGAACAAAGACAAGATAAAGAAGAGTGGCAACAAAGCAGTCAGTAGTGTCTCTAGCAAAGATGAAAGTAGTTTGGTTGGTGAAGAGGCATAA 2784 0.4206 MLACSTLHGPSTFHRHSQPSKFILSKPLLFPPRSHFAAFGNLKFRSMFSSKNRRHSFSVKASLDSSSEVLESIDVGGPHIGPQRYSVKIPVGDRHILVETGHMGRQASGSVTVTDGETVLYTTVCLSDIPSEPSDFFPLSVNYQERFSAAGRTSGGFFKREGKTKDHEVLICRLIDRPLRPTMPKGFYHETQILSWVLSYDGIHIPDSLAVTAAGIALALSEVPMSKAVAGVRVGLVGDKYIVNPTNEEMENSELDLMLAGTDSAILMIEGYGNFLLEEKLLKAVEVGQDAVRAICNEVEALVKKCGKPKMIDAIKLPPPELYKHVEEIAGEELVKALQIRNKIPRRKALSSLEEKVLKILTENGFVTNDLAPRSNAETITEILEDEDEDEEVIVDGEVDEGDVHIKPTPRKPTPLFSEVDVKLVFKEVTSMFWRKRIVEGGKRSDGRTPHEIRPINSSCGLLPRAHGSALFTRGETQSLAVATLGDNKMAQRVDNLIGVDDYKKFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERSLETILPSDGDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPIMEEALLQAREGRKHILGEMMKCSPPPAKRLSKYAPLIHIMKVRADKINLIIGSGGKKVKSIIEQSGIEAIDAEDDGTVKIFAKDLASLEKSKAMISNLTMVPNIGDIYRNCEIKSIVPFGVFVEIAPGREGLCHISELSSGWLAKPEDAFKVGDRIDVKLKEINEKGQLRLSHRAMLPDADSDNSSDKGSLEEVTSLTTEKPNDKVNTPKGTASSKRSSEDNSILPSKKFIRRSVNPSQEKPVSNKDKIKKSGNKAVSSVSSKDESSLVGEEA 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02859 927 MobiDBLite consensus disorder prediction 843 875 - -
Trre13g02859 927 SMART S1_6 757 828 IPR022967 -
Trre13g02859 927 FunFam Polyribonucleotide nucleotidyltransferase 686 755 - -
Trre13g02859 927 NCBIfam polyribonucleotide nucleotidyltransferase 418 829 IPR012162 GO:0003723|GO:0004654|GO:0006402
Trre13g02859 927 SUPERFAMILY Ribosomal protein S5 domain 2-like 426 598 IPR020568 -
Trre13g02859 927 Gene3D K Homology domain, type 1 686 758 IPR036612 GO:0003723
Trre13g02859 927 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 79 874 IPR012162 GO:0003723|GO:0004654|GO:0006402
Trre13g02859 927 CDD RNase_PH_PNPase_2 452 680 - -
Trre13g02859 927 SUPERFAMILY Ribonuclease PH domain 2-like 580 684 IPR036345 -
Trre13g02859 927 FunFam Polyribonucleotide nucleotidyltransferase 83 313 - -
Trre13g02859 927 Hamap Polyribonucleotide nucleotidyltransferase [pnp]. 83 831 IPR012162 GO:0003723|GO:0004654|GO:0006402
Trre13g02859 927 ProSiteProfiles Type-1 KH domain profile. 689 749 - -
Trre13g02859 927 Pfam KH domain 694 750 IPR004088 GO:0003723
Trre13g02859 927 CDD KH-I_PNPase 687 756 - -
Trre13g02859 927 FunFam Polyribonucleotide nucleotidyltransferase 1, chloroplastic 759 830 - -
Trre13g02859 927 CDD S1_PNPase 759 827 - -
Trre13g02859 927 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 684 753 IPR036612 GO:0003723
Trre13g02859 927 CDD RNase_PH_PNPase_1 85 311 - -
Trre13g02859 927 Gene3D - 83 308 IPR027408 -
Trre13g02859 927 MobiDBLite consensus disorder prediction 826 927 - -
Trre13g02859 927 FunFam Polyribonucleotide nucleotidyltransferase 390 685 - -
Trre13g02859 927 SUPERFAMILY Ribosomal protein S5 domain 2-like 86 224 IPR020568 -
Trre13g02859 927 Pfam S1 RNA binding domain 765 828 IPR003029 GO:0003676
Trre13g02859 927 SUPERFAMILY Nucleic acid-binding proteins 750 832 IPR012340 -
Trre13g02859 927 Gene3D - 759 830 IPR012340 -
Trre13g02859 927 ProSiteProfiles S1 domain profile. 759 828 IPR003029 GO:0003676
Trre13g02859 927 Pfam 3' exoribonuclease family, domain 2 228 290 IPR015847 -
Trre13g02859 927 Pfam 3' exoribonuclease family, domain 2 591 664 IPR015847 -
Trre13g02859 927 Gene3D - 398 685 IPR027408 -
Trre13g02859 927 SMART kh_6 688 754 IPR004087 GO:0003676
Trre13g02859 927 SUPERFAMILY Ribonuclease PH domain 2-like 226 311 IPR036345 -
Trre13g02859 927 Pfam 3' exoribonuclease family, domain 1 452 586 IPR001247 -
Trre13g02859 927 Pfam 3' exoribonuclease family, domain 1 94 224 IPR001247 -
Trre13g02859 927 SUPERFAMILY Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 319 449 IPR036456 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02859 Trre-Chr13 27938125 27962543 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02859 K00962 - gmx:100785430 1354.35