Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02858 ATGGGTGTCTCTTTTGATTCACCATCACAAAAGGGTTCATGGAGATTTTTCACTAGAAGGAAGCAGGTTGATTCTGCAACTAAAAACACCAACACTCTACTTTCAAAGGAATTAACTGTTTTTCATCTAATTGCAATTGGTGTTGGTTCAACAATTGGTGCTGGAGTGTATGTTTTGGTTGGAACAGTAGCTAGAGAGCATTCTGGACCAGCTTTAGCTATTTCTTTTCTGATTGCTGGATTAGCAGCTGGTCTTTCTGCATTTTGTTATGCCGAGTTGGCTTGTCGTTGTCCTTCTGCTGGAAGTGCATATCACTATTCGTACATATGTCTTGGAGAAGGTGTTGCTTGGTTAATCGGCTGGGCCTTGGTACTGGAATATACAATTGGTGGCGCTGCTGTGGCTCGTGGCGTAACCCCTAATCTTGCTCAACTTTTTGGTGGTCTCGACAATCTACCATTCTTTTTGTTGCGACAGCATATTCCTGGGATTGATATTGTTGTGGACCCATGTGCAGCAATTTTGGTATTTCTTGTTACAGGATTGTTATGTTTGGGGATCAAGGAGAGCACAGTGGTACAAGGCATAATAACATCAGTGAATGTATGTGCATTGCTTTTTGTGATAATAGCTGGTGGTTACATAGGATTCAAATCTGGATGGGTTGGATATGAACTTCCTACTGGGTATTTTCCCTTTGGAGTTGATGGAATGCTTGCTGGTTCGGCAACAGTCTTCTTTGCATATGTAGGTTTCGACGCAGTTGCCAGCACTGCCGAAGAGGTGAAAAATCCTCAGCGAGATTTGCCACTGGGTATCGGTGTTTCATTGTTTCTATGTTGTGGAATGTATATGTTGGTTTCCATTGTTGTGGTTGGTTTAGTACCTTATTATGCAATTGATCCCGATACCCCAATATCCTCTGCATTTGCTGACCATGGAATGCAATGGGCCGCTTACATTATAAATGCTGGAGCTTGCACAGCTCTCTGCTCGGCATTGATGGGTGGAATACTTCCCCAGCCACGGATTTTGATGGCTATGGCAAGGGATGGACTACTGCCACCATTTCTTTGTGACATAAATAGGCAAACTCTAGTTCCTGTCAAGGGCACAATACTTACTGGCCTAGCAGCTGCAGTCTTGGCATTTTCTATGGAAGTCTCTGAACTTGCAGGAATGGTTAGTGTTGGTACCCTTTTAGCATTCACCATGGTGGCAATATCTGTGCTGATCCTAAGATATATTCCTCCAAATAAAGTCCCAATGCCTCCTTCTCTCCAGGATTCAATTGTAGAGATCAATGTGGAATATGTAGAGGAAAATATTAGTACTTCTGAAGACACAAAACCTTTAAATGTTGCACGAGATTTTCCCATTGCCATAGACACATATCTAAATGAGGGTAACAGAAGAAGAGTTGTTGAGTGGACTATAGCATTCATATGCTTAGGGGCGTTTGTCCTTACATATGCAGCTTCTTGTTTAACTCTTAGCTCAGTTCGCTTTGCATTGTGTGGAGTTGGAGGCATTCTTCTTGTGTCTGGATTCGTCTTCCTAACCTGTATAGATCAAGATGAAGCAAGGCACGACTTTGGTCACTCTGGAGGTTTTGTATGCCCATTTGTGCCGCTGCTGCCTATTGCTTGCATTCTCATAAATTCCTACCTACTCATTAATCTTGGAGTGGGAACATGGTTGCGTGTCTCTGTATGGTTGGTAATAGGACTACTAATTTATGTGTTTTATGGCCGAACTCATAGTTCTCTAAAAGATGCAATTTATGTCCCAGTAAGTCAAGTGGACCAAACTTATCAAGCTCCCAGAAGCTATCTTGCTTAA 1842 0.424 MGVSFDSPSQKGSWRFFTRRKQVDSATKNTNTLLSKELTVFHLIAIGVGSTIGAGVYVLVGTVAREHSGPALAISFLIAGLAAGLSAFCYAELACRCPSAGSAYHYSYICLGEGVAWLIGWALVLEYTIGGAAVARGVTPNLAQLFGGLDNLPFFLLRQHIPGIDIVVDPCAAILVFLVTGLLCLGIKESTVVQGIITSVNVCALLFVIIAGGYIGFKSGWVGYELPTGYFPFGVDGMLAGSATVFFAYVGFDAVASTAEEVKNPQRDLPLGIGVSLFLCCGMYMLVSIVVVGLVPYYAIDPDTPISSAFADHGMQWAAYIINAGACTALCSALMGGILPQPRILMAMARDGLLPPFLCDINRQTLVPVKGTILTGLAAAVLAFSMEVSELAGMVSVGTLLAFTMVAISVLILRYIPPNKVPMPPSLQDSIVEINVEYVEENISTSEDTKPLNVARDFPIAIDTYLNEGNRRRVVEWTIAFICLGAFVLTYAASCLTLSSVRFALCGVGGILLVSGFVFLTCIDQDEARHDFGHSGGFVCPFVPLLPIACILINSYLLINLGVGTWLRVSVWLVIGLLIYVFYGRTHSSLKDAIYVPVSQVDQTYQAPRSYLA 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02858 613 Gene3D Amino acid/polyamine transporter I 455 602 - -
Trre13g02858 613 Gene3D Amino acid/polyamine transporter I 34 430 - -
Trre13g02858 613 PIRSF AA_transporter 17 423 - -
Trre13g02858 613 PIRSF AA_transporter 453 597 - -
Trre13g02858 613 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 18 589 - -
Trre13g02858 613 Pfam C-terminus of AA_permease 538 588 IPR029485 -
Trre13g02858 613 Pfam Amino acid permease 39 420 IPR002293 GO:0016020|GO:0022857|GO:0055085
Trre13g02858 613 FunFam probable cationic amino acid transporter 34 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02858 Trre-Chr13 27931444 27936357 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02858 12 613 Organic Solute Cotransporters AT5G36940 64.773 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02858 K13863 - gmx:100784895 1002.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02858 13 27931444 27936357 Trre13g02858 13 27931444 27936357 ECH