Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02856 ATGATTGTGCAGGGTGGGAATGGGGGTGTTAGTATTGGAGAAGGAGGAAGGTGGTTGAGTGGATTTGGAAGCTTGATTAGGAGGAAACAAGTTGATTCTGTTCATTATAGGGAACATCCTCAATTGGCTAGGAAATTATCTGCTGTTGATCTTGTTGGAATTGGGGTTGGAGCTACTATAGGAGCTGGAGTGTATATTCTCATTGGAACAGTTGCTAGGGAGCAGGCAGGACCGGCACTTATTGCAGAACTTGCTTGTCGATGTCCTTCCGCAGGGAGTGCTTATCATTATACATACATATGCATTGGAGAAGGGGTTGCTTGGTTGGTAGGTTGGTCCCTGATTCTAGAATATACAATTGGTGCTTCAGCTGTTGCTCGTGGCATAACCCCAAATCTGGCCTTGTTTTTTGGTGGTCAAGACAACCTACCTTCGTTTCTTGCTCGTCATACCTTGCCAGGTCTTGGGATAGTGGTTGATCCATGTGCAGCTGTATTAATTATTCTTATTACATTCCTCTTGTGTCTTGGAATCAAGGAGAGTTCAACGGTACAATCCATTGTGACGACAGTAAATGTCTCTGTCATGCTTTTCATCATCATAGTTGGTGGTTATCTAGGTTTCAAAACCGGATGGGTTGGTTATGAACTCCCCAGCGGGTATTTTCCATATGGAGTGAATGGGATGTTTTCTGGGTCTGCTATAGTTTTCTTTTCATACATTGGTTTTGATTCAGTGTCCAGTACCGCTGAGGAGGTCAAAAATCCTCAACGAGATTTGCCAATTGGCATATCAACTGCATTAGCTATATGTTGCATTCTGTATATGCTTGTATCAGCAGTTATTGTTGGGTTAGTACCGTATTATGCGTTGAACCCTGATACCCCAATCTCCTCAGCATTTTCTAGCTATGGGATGGAATGGGCAGTGTATATAATAACAACTGGAGCTGTCACTGCACTTTTTTCCAGTTTGTTGGGATCAGTTCTTCCTCAGCCACGAGTCTTTATGGCAATGGCTAGGGATGGTTTGTTGCCCTCCTTCTTCTCGGATATCCATAGGAGCACACAAATTCCTTTGAAAAGTACTATTGTCACTGGTCTCTTTGCTGCTGTTCTTGCATTCTTTATGGATGTTTCTCAGTTAGCAGGGATGGTTAGTGTAGGAACATTGCTTGCATTTACCACAGTTGCAGTTTCAGTTTTGATAATCAGATATGTTCCGCCTGATGAAGTACCAATTCCAGCTTCACTTCTAACATCTGTGGATCCATTATTGAGGCATTCTGGTGATGGTATTGAGGAAGACGTGACCATAAGTCCCGTAGGTCTTGCTAGTTATTCTTATAATAATGACTTAAACGACAAGTCAGACGTTCTGCTTGAACATCCTTTAATCATAAAAGAAGAAACCAAAGAGCGACGTAATGAGAAGTCTAGGAGAAAACTTGCTGCATGGACGATATCCCTTCTATGTATAGGGATTCTCATACTTACTGGTTCAGCTGCAGCCGAAAGATGTCCCAGGGTTGTGCGCATAACGTTGTTTGGAGTGGGTGTAATTATTCTTTTGTGCAGCATAATTGTGCTGGCCTGTATAAAGCAAGATGATACCAGGCACACGTTTGGACACTCAGGAGGTTTTGCTTGCCCTTTTGTTCCATTCTTACCTGCTGCCTGCATTCTTATAAACACATACTTACTAATTGATCTTGGGGTTGCTACATGGCTAAGAGTTTCTGTATGGTTATTAATCGGAGCACTTATTTACTTGTTCTATGGCCGAACTCACAGTTCATTGTTAAATGCAATCTATGTTCCTTCAGCCCGTGCCGATGAGATCCATCGCACTCACGCAAACCATTTAGCCTAG 1872 0.4268 MIVQGGNGGVSIGEGGRWLSGFGSLIRRKQVDSVHYREHPQLARKLSAVDLVGIGVGATIGAGVYILIGTVAREQAGPALIAELACRCPSAGSAYHYTYICIGEGVAWLVGWSLILEYTIGASAVARGITPNLALFFGGQDNLPSFLARHTLPGLGIVVDPCAAVLIILITFLLCLGIKESSTVQSIVTTVNVSVMLFIIIVGGYLGFKTGWVGYELPSGYFPYGVNGMFSGSAIVFFSYIGFDSVSSTAEEVKNPQRDLPIGISTALAICCILYMLVSAVIVGLVPYYALNPDTPISSAFSSYGMEWAVYIITTGAVTALFSSLLGSVLPQPRVFMAMARDGLLPSFFSDIHRSTQIPLKSTIVTGLFAAVLAFFMDVSQLAGMVSVGTLLAFTTVAVSVLIIRYVPPDEVPIPASLLTSVDPLLRHSGDGIEEDVTISPVGLASYSYNNDLNDKSDVLLEHPLIIKEETKERRNEKSRRKLAAWTISLLCIGILILTGSAAAERCPRVVRITLFGVGVIILLCSIIVLACIKQDDTRHTFGHSGGFACPFVPFLPAACILINTYLLIDLGVATWLRVSVWLLIGALIYLFYGRTHSSLLNAIYVPSARADEIHRTHANHLA 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02856 623 PIRSF AA_transporter 23 418 - -
Trre13g02856 623 PIRSF AA_transporter 473 605 - -
Trre13g02856 623 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 25 599 - -
Trre13g02856 623 Gene3D Amino acid/polyamine transporter I 470 609 - -
Trre13g02856 623 Gene3D Amino acid/polyamine transporter I 42 423 - -
Trre13g02856 623 Pfam C-terminus of AA_permease 548 598 IPR029485 -
Trre13g02856 623 Pfam Amino acid permease 64 411 IPR002293 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02856 Trre-Chr13 27897150 27902182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02856 24 623 Organic Solute Cotransporters AT3G03720 62.903 0.0 775
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02856 K13863 - gmx:100810218 1043.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02856 13 27897150 27902182 Trre13g02856 13 27897150 27902182 ECH