Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02836 ATGTTGAGGGTTGCATCTAAGAGGCTTTCATCTCTTTCAGGGAGGGTGAATCACACCGCCTCCGCTCTCCTCACCAGGAACCCTATCGCACCTCCTTCTTCACCCGATCATCAACGCAGATCTGACCCTTTTTCGATCCAATCCGAATTCTTTCTTCCTTTTAGAGGTTTTGCTACTGAATCACTGATCCACCCAAAAGAGAACAGCATTATGCCTGAAATTCCTGCAACTGTTACAGCTGTTAAAAACCCTTCTTCTAAGATTGTATATGATGAACACAACCATGAAAGATTTCCTCCTGGTGACCCAAGCAAGAGGGCATTTGCATACTTTGTCCTAACTGGTGGAAGGTTTGCTTATGCCTCTGTGATCCGCCTTCTTGTCCTCAAGTTTGTGCTCAGCATGTCGGCAAGTAAGGATGTTCTTGCTATGGCTTCACTTGAAGTTGATCTCTCCAGCATTGAGCCAGGCACTACTGTCACTGTTAAGTGGCGTGGAAAGCCGGTATTCATCAGGCGCAGAACAGATGACGATGTGAAGCTGGCAAACAGTGTTGATGTTGGATCTCTTCGTGACCCTCAGCAAGATGCTGAAAGAGTCAAGAACCCAGAATGGCTCATTGTGATCGGTGTTTGCACACATCTGGGTTGCATTCCCTTGCCAAATGCTGGGGACTATGGTGGATGGTTTTGCCCATGCCATGGATCACATTATGATATTTCTGGCAGAATTAGGAAGGGACCTGCACCATACAATCTGGAGGTACCTACTTATACATTCTTGGAGGAAAACAAGTTGTTGATCGGTTAA 810 0.4617 MLRVASKRLSSLSGRVNHTASALLTRNPIAPPSSPDHQRRSDPFSIQSEFFLPFRGFATESLIHPKENSIMPEIPATVTAVKNPSSKIVYDEHNHERFPPGDPSKRAFAYFVLTGGRFAYASVIRLLVLKFVLSMSASKDVLAMASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTDDDVKLANSVDVGSLRDPQQDAERVKNPEWLIVIGVCTHLGCIPLPNAGDYGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYTFLEENKLLIG 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02836 269 SUPERFAMILY ISP domain 131 268 IPR036922 GO:0051537
Trre13g02836 269 NCBIfam ubiquinol-cytochrome c reductase iron-sulfur subunit 121 269 IPR006317 GO:0008121
Trre13g02836 269 SUPERFAMILY ISP transmembrane anchor 86 142 - -
Trre13g02836 269 Gene3D - 138 269 IPR036922 GO:0051537
Trre13g02836 269 Pfam Rieske [2Fe-2S] domain 152 255 IPR017941 GO:0051537
Trre13g02836 269 FunFam Cytochrome b-c1 complex subunit Rieske, mitochondrial 139 269 - -
Trre13g02836 269 Pfam Ubiquinol cytochrome reductase transmembrane region 91 140 IPR004192 GO:0008121
Trre13g02836 269 PRINTS Rieske 2Fe-2S subunit signature 229 241 IPR005805 GO:0016020|GO:0051537
Trre13g02836 269 PRINTS Rieske 2Fe-2S subunit signature 241 253 IPR005805 GO:0016020|GO:0051537
Trre13g02836 269 PRINTS Rieske 2Fe-2S subunit signature 207 218 IPR005805 GO:0016020|GO:0051537
Trre13g02836 269 CDD Rieske_cytochrome_bc1 146 269 - -
Trre13g02836 269 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 199 267 IPR017941 GO:0051537
Trre13g02836 269 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 76 269 IPR014349 GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02836 Trre-Chr13 27596793 27599584 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02836 K00411 - gmx:100806917 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02836 13 27596793 27599584 Trre13g02836 13 27596793 27599584 ECH